Wall clock time and date at job start Mon Mar 30 2020 03:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38107 * 119.88004 * 2 1 4 4 C 1.38209 * 120.11418 * 180.02562 * 3 2 1 5 5 C 1.38223 * 120.03363 * 359.89774 * 4 3 2 6 6 C 1.38734 * 120.20138 * 0.04017 * 5 4 3 7 7 C 1.39000 * 119.87224 * 0.13636 * 6 5 4 8 8 N 1.39860 * 121.86758 * 179.47910 * 7 6 5 9 9 C 1.46759 * 112.09229 * 20.18420 * 8 7 6 10 10 H 1.08997 * 109.62384 * 69.38314 * 9 8 7 11 11 C 1.50706 * 109.61283 * 189.91939 * 9 8 7 12 12 H 1.08003 * 119.99694 * 119.09998 * 11 9 8 13 13 C 1.37874 * 120.00136 * 299.09300 * 11 9 8 14 14 N 1.31519 * 119.99857 * 179.97438 * 13 11 9 15 15 Si 1.86801 * 120.00001 * 0.02562 * 13 11 9 16 16 H 1.48497 * 109.47211 * 89.99578 * 15 13 11 17 17 H 1.48501 * 109.47194 * 209.99793 * 15 13 11 18 18 H 1.48507 * 109.46937 * 329.99595 * 15 13 11 19 19 C 1.53426 * 108.58831 * 309.64602 * 9 8 7 20 20 O 1.36144 * 118.75376 * 180.20826 * 6 5 4 21 21 H 1.09002 * 109.47036 * 269.97746 * 1 2 3 22 22 H 1.08993 * 109.47716 * 29.98171 * 1 2 3 23 23 H 1.09004 * 109.47264 * 149.98080 * 1 2 3 24 24 H 1.08000 * 119.94012 * 0.02794 * 3 2 1 25 25 H 1.07998 * 119.98362 * 179.90145 * 4 3 2 26 26 H 1.07996 * 119.89708 * 180.02562 * 5 4 3 27 27 H 1.00894 * 110.99705 * 255.42505 * 8 7 6 28 28 H 0.97004 * 119.99498 * 180.02562 * 14 13 11 29 29 H 1.08997 * 109.76983 * 182.86392 * 19 9 8 30 30 H 1.08991 * 109.77156 * 303.60095 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1975 0.0000 4 6 3.5771 1.2031 -0.0005 5 6 4.2738 0.0093 0.0011 6 6 3.5900 -1.1978 0.0024 7 6 2.2000 -1.2061 -0.0008 8 7 1.4688 -2.3982 -0.0104 9 6 2.2671 -3.5392 0.4529 10 1 2.4654 -3.4380 1.5199 11 6 1.5168 -4.8202 0.1934 12 1 1.9404 -5.5719 -0.4562 13 6 0.2898 -5.0326 0.7852 14 7 -0.3651 -6.1503 0.5583 15 14 -0.4430 -3.7321 1.9083 16 1 -1.2699 -2.7947 1.1067 17 1 -1.2922 -4.3868 2.9357 18 1 0.6507 -2.9810 2.5755 19 6 3.5932 -3.5536 -0.3185 20 8 4.3057 -2.3559 0.0083 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5141 24 1 1.6521 2.1311 0.0005 25 1 4.1130 2.1408 -0.0021 26 1 5.3538 0.0163 0.0011 27 1 1.0797 -2.5763 -0.9242 28 1 -1.2286 -6.2994 0.9744 29 1 4.1807 -4.4237 -0.0254 30 1 3.3962 -3.5858 -1.3899 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213114640.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:24 Heat of formation + Delta-G solvation = -33.428057 kcal Electronic energy + Delta-G solvation = -14935.782299 eV Core-core repulsion = 12502.009457 eV Total energy + Delta-G solvation = -2433.772842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.80220 -38.62098 -36.92157 -34.58029 -32.94839 -31.89172 -28.53484 -27.53954 -26.91674 -24.01167 -22.13143 -21.29227 -19.52858 -18.29361 -17.62419 -17.40876 -16.45173 -16.02727 -15.51806 -15.21402 -14.83650 -14.73154 -14.44932 -14.04917 -13.90873 -13.21859 -12.96322 -12.67473 -12.61295 -12.29724 -12.13329 -11.91919 -11.60006 -11.46399 -10.88770 -10.26321 -9.16360 -8.71773 -8.39094 -6.55768 0.42549 0.51845 1.41547 1.44637 1.61386 2.37193 2.42665 2.82106 2.85116 3.39090 3.75175 4.09570 4.10645 4.15339 4.35697 4.44013 4.52146 4.69126 4.77557 4.81339 4.82396 5.00959 5.29871 5.35337 5.36976 5.48122 5.65273 5.91207 5.95106 6.15590 6.47309 6.54454 6.66907 7.21816 8.72253 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033679 B = 0.012065 C = 0.009466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.187672 B = 2320.155484 C = 2957.113725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.082 4.082 3 C -0.136 4.136 4 C -0.099 4.099 5 C -0.148 4.148 6 C 0.053 3.947 7 C 0.013 3.987 8 N -0.633 5.633 9 C 0.157 3.843 10 H 0.038 0.962 11 C -0.531 4.531 12 H 0.053 0.947 13 C 0.043 3.957 14 N -0.930 5.930 15 Si 0.977 3.023 16 H -0.259 1.259 17 H -0.312 1.312 18 H -0.276 1.276 19 C 0.047 3.953 20 O -0.331 6.331 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.053 0.947 24 H 0.155 0.845 25 H 0.163 0.837 26 H 0.140 0.860 27 H 0.352 0.648 28 H 0.270 0.730 29 H 0.114 0.886 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 15.555 -1.615 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.084 4.084 3 C -0.154 4.154 4 C -0.117 4.117 5 C -0.167 4.167 6 C 0.005 3.995 7 C -0.086 4.086 8 N -0.264 5.264 9 C 0.049 3.951 10 H 0.056 0.944 11 C -0.569 4.569 12 H 0.071 0.929 13 C -0.159 4.159 14 N -0.568 5.568 15 Si 0.806 3.194 16 H -0.184 1.184 17 H -0.241 1.241 18 H -0.201 1.201 19 C -0.030 4.030 20 O -0.246 6.246 21 H 0.080 0.920 22 H 0.109 0.891 23 H 0.072 0.928 24 H 0.172 0.828 25 H 0.181 0.819 26 H 0.157 0.843 27 H 0.180 0.820 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.356 15.457 -0.982 16.089 hybrid contribution -0.168 -0.672 -0.165 0.712 sum 4.187 14.786 -1.147 15.410 Atomic orbital electron populations 1.20659 0.90308 1.02901 1.02089 1.19951 0.96895 0.91296 1.00237 1.21170 0.94601 0.97200 1.02479 1.21220 0.94046 0.97558 0.98866 1.20712 1.00789 0.89489 1.05710 1.19521 0.90524 0.87366 1.02052 1.19177 0.90316 0.92572 1.06486 1.57974 1.35482 1.01734 1.31192 1.20079 0.90449 0.89014 0.95523 0.94428 1.20876 1.04369 1.00878 1.30788 0.92902 1.25688 0.96867 0.96712 0.96637 1.70026 1.15253 1.26700 1.44805 0.85210 0.77817 0.78489 0.77876 1.18413 1.24146 1.20132 1.23485 0.95223 0.85179 0.99125 1.86174 1.38194 1.14524 1.85660 0.92034 0.89054 0.92767 0.82786 0.81907 0.84263 0.82002 0.92075 0.86805 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.02 9.73 71.24 0.69 -2.33 16 2 C -0.08 -2.64 5.90 -19.69 -0.12 -2.75 16 3 C -0.14 -3.43 9.68 22.23 0.22 -3.21 16 4 C -0.10 -2.35 10.04 22.26 0.22 -2.12 16 5 C -0.15 -4.41 9.94 22.38 0.22 -4.19 16 6 C 0.05 2.00 6.47 22.57 0.15 2.14 16 7 C 0.01 0.49 6.13 38.25 0.23 0.73 16 8 N -0.63 -27.44 2.91 -320.90 -0.93 -28.38 16 9 C 0.16 7.41 2.04 44.34 0.09 7.50 16 10 H 0.04 1.94 7.18 -2.39 -0.02 1.93 16 11 C -0.53 -29.10 9.16 25.60 0.23 -28.86 16 12 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 13 C 0.04 2.43 5.47 84.65 0.46 2.89 16 14 N -0.93 -56.02 13.96 21.45 0.30 -55.72 16 15 Si 0.98 47.79 26.10 68.60 1.79 49.58 16 16 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.31 -15.28 7.11 99.48 0.71 -14.58 16 18 H -0.28 -13.74 6.53 99.48 0.65 -13.09 16 19 C 0.05 1.92 6.49 72.13 0.47 2.38 16 20 O -0.33 -13.32 10.40 -95.19 -0.99 -14.31 16 21 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.09 2.00 8.08 -2.39 -0.02 1.98 16 23 H 0.05 1.78 7.19 -2.39 -0.02 1.76 16 24 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 25 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 26 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.35 15.05 8.36 -89.70 -0.75 14.30 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.11 4.42 8.14 -2.39 -0.02 4.40 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -63.91 250.88 3.38 -60.54 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.34 Total: 16.12 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 2.87 Total: -27.82 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -0.63 Total: -84.10 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.99 Total: -14.31 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.79 Total: 49.58 kcal Total: -63.91 3.38 -60.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213114640.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.109 kcal (2) G-P(sol) polarization free energy of solvation -63.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds