Wall clock time and date at job start Mon Mar 30 2020 03:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48504 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47152 * 299.99449 * 3 2 1 6 6 H 1.48500 * 109.47206 * 59.99944 * 3 2 1 7 7 C 1.37881 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00006 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.35501 * 60.68577 * 9 7 2 11 11 C 1.54940 * 110.31016 * 182.83184 * 9 7 2 12 12 C 1.55300 * 100.94415 * 155.35699 * 11 9 7 13 13 C 1.54377 * 102.25502 * 325.86750 * 12 11 9 14 14 H 1.09000 * 109.83189 * 261.84669 * 13 12 11 15 15 C 1.50695 * 109.83610 * 140.86829 * 13 12 11 16 16 C 1.38673 * 120.41852 * 100.40960 * 15 13 12 17 17 C 1.38631 * 118.42114 * 180.02562 * 16 15 13 18 18 C 1.38230 * 119.16050 * 0.02562 * 17 16 15 19 19 N 1.31861 * 120.76472 * 359.97438 * 18 17 16 20 20 C 1.31882 * 121.72265 * 359.70633 * 19 18 17 21 21 O 1.43245 * 107.58529 * 21.35358 * 13 12 11 22 22 H 0.96997 * 120.00294 * 0.02562 * 1 2 3 23 23 H 1.09007 * 111.12756 * 37.43650 * 11 9 7 24 24 H 1.09006 * 111.12498 * 273.27785 * 11 9 7 25 25 H 1.09006 * 110.85287 * 207.67375 * 12 11 9 26 26 H 1.09004 * 111.02471 * 84.13526 * 12 11 9 27 27 H 1.07995 * 120.79230 * 359.97438 * 16 15 13 28 28 H 1.07995 * 120.42294 * 179.97438 * 17 16 15 29 29 H 1.08000 * 119.61887 * 179.97438 * 18 17 16 30 30 H 1.08001 * 119.62089 * 180.31291 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6286 -2.5776 -0.8907 11 6 2.2390 -3.6906 0.0730 12 6 1.3336 -4.7868 0.6978 13 6 0.4291 -3.9659 1.6418 14 1 0.8147 -4.0166 2.6600 15 6 -0.9776 -4.5047 1.5987 16 6 -1.4404 -5.3404 2.6039 17 6 -2.7413 -5.8126 2.5225 18 6 -3.5281 -5.4378 1.4495 19 7 -3.0544 -4.6411 0.5116 20 6 -1.8242 -4.1681 0.5597 21 8 0.4439 -2.6088 1.1836 22 1 -0.4850 0.8400 -0.0004 23 1 3.0838 -3.4615 0.7226 24 1 2.5780 -3.9808 -0.9215 25 1 1.9281 -5.5073 1.2595 26 1 0.7415 -5.2882 -0.0679 27 1 -0.8024 -5.6176 3.4300 28 1 -3.1349 -6.4657 3.2873 29 1 -4.5425 -5.8016 1.3786 30 1 -1.4728 -3.5139 -0.2245 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225100904.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:32 Heat of formation + Delta-G solvation = -15.921410 kcal Electronic energy + Delta-G solvation = -14554.249677 eV Core-core repulsion = 12121.235980 eV Total energy + Delta-G solvation = -2433.013697 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92544 -37.93662 -33.02566 -32.14224 -31.12164 -30.90215 -27.97151 -24.86318 -23.14220 -22.58832 -20.43021 -20.24095 -16.87278 -16.57850 -16.08208 -15.32566 -14.74500 -14.59499 -13.94017 -13.58739 -13.24968 -12.73494 -12.44682 -12.21773 -11.86175 -11.72433 -10.97173 -10.74845 -10.61634 -10.43048 -10.27955 -9.95025 -9.43047 -9.19043 -9.03314 -8.62961 -8.53471 -7.95610 -6.01954 -4.15342 1.49544 1.62631 3.29898 3.37980 3.41065 4.16982 4.41646 4.79253 4.99330 5.10433 5.25847 5.27580 5.41526 5.44901 5.54938 5.64943 5.88536 6.05599 6.15110 6.22060 6.34642 6.42014 6.54172 6.64087 6.74479 6.83774 7.11829 7.52786 7.87441 8.21965 8.37315 8.56058 8.99270 9.55877 11.05332 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.041245 B = 0.008109 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.711409 B = 3452.190645 C = 3841.375962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.208 3.792 10 H 0.029 0.971 11 C -0.147 4.147 12 C -0.146 4.146 13 C 0.113 3.887 14 H 0.070 0.930 15 C -0.130 4.130 16 C -0.079 4.079 17 C -0.182 4.182 18 C 0.081 3.919 19 N -0.489 5.489 20 C 0.128 3.872 21 O -0.346 6.346 22 H 0.261 0.739 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -10.675 3.676 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.128 4.128 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.153 3.847 10 H 0.046 0.954 11 C -0.184 4.184 12 C -0.184 4.184 13 C 0.052 3.948 14 H 0.087 0.913 15 C -0.132 4.132 16 C -0.105 4.105 17 C -0.202 4.202 18 C -0.076 4.076 19 N -0.197 5.197 20 C -0.029 4.029 21 O -0.265 6.265 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.165 0.835 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.542 -10.161 3.056 10.911 hybrid contribution 0.974 0.447 0.806 1.341 sum -1.568 -9.714 3.862 10.570 Atomic orbital electron populations 1.70032 1.05983 1.26581 1.47001 1.25081 0.94781 0.99315 0.93648 0.86568 0.80199 0.83707 0.77656 1.19645 1.20874 1.20877 1.21126 0.92742 0.89994 1.53489 0.91781 1.20595 0.86779 0.92492 0.84831 0.95369 1.23349 0.99270 0.95881 0.99949 1.23123 0.98039 0.98372 0.98841 1.21384 0.88660 0.86637 0.98070 0.91251 1.21541 0.99079 0.97174 0.95400 1.21399 0.95498 0.95787 0.97783 1.21993 0.95261 1.02690 1.00245 1.22679 0.99670 0.94738 0.90507 1.67748 1.15038 1.09606 1.27315 1.22801 0.88057 0.94821 0.97173 1.88934 1.71914 1.19675 1.45997 0.92905 0.91386 0.91742 0.91575 0.91608 0.85342 0.85437 0.83480 0.82028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 12.93 55.43 0.72 -24.73 16 2 C 0.08 2.20 5.42 -17.82 -0.10 2.10 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.54 -14.84 8.81 -34.44 -0.30 -15.15 16 8 H 0.06 1.72 7.77 -52.48 -0.41 1.31 16 9 C 0.21 5.23 3.27 -26.86 -0.09 5.14 16 10 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 11 C -0.15 -2.93 6.53 -24.49 -0.16 -3.09 16 12 C -0.15 -2.53 6.53 -24.79 -0.16 -2.69 16 13 C 0.11 2.21 3.75 -27.16 -0.10 2.11 16 14 H 0.07 1.27 8.05 -51.93 -0.42 0.86 16 15 C -0.13 -2.38 4.86 -104.48 -0.51 -2.89 16 16 C -0.08 -1.18 9.83 -39.28 -0.39 -1.57 16 17 C -0.18 -2.46 10.11 -39.44 -0.40 -2.86 16 18 C 0.08 1.22 11.18 -17.54 -0.20 1.02 16 19 N -0.49 -9.13 10.36 -13.25 -0.14 -9.26 16 20 C 0.13 2.55 10.52 -17.55 -0.18 2.37 16 21 O -0.35 -8.78 9.53 -35.23 -0.34 -9.12 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.10 7.83 -51.93 -0.41 0.70 16 27 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.16 3.54 7.73 -52.49 -0.41 3.13 16 LS Contribution 260.81 15.07 3.93 3.93 Total: -1.00 -30.98 260.81 -7.16 -38.14 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -3.73 Total: 0.29 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.59 Total: -15.52 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.58 Total: -34.00 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.34 Total: -9.12 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.98 -7.16 -38.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225100904.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.217 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds