Wall clock time and date at job start Mon Mar 30 2020 03:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.08999 * 110.33113 * 302.24628 * 9 7 2 11 11 C 1.54484 * 110.36901 * 180.02562 * 9 7 2 12 12 C 1.54517 * 104.05923 * 217.18734 * 11 9 7 13 13 C 1.54479 * 104.06216 * 359.97438 * 12 11 9 14 14 H 1.08999 * 110.37499 * 265.14864 * 13 12 11 15 15 C 1.50699 * 110.36888 * 142.91999 * 13 12 11 16 16 C 1.38680 * 120.41535 * 99.71907 * 15 13 12 17 17 C 1.38634 * 118.41677 * 179.77961 * 16 15 13 18 18 C 1.38224 * 119.16240 * 0.52087 * 17 16 15 19 19 N 1.31850 * 120.76381 * 359.72194 * 18 17 16 20 20 C 1.31884 * 121.72678 * 0.02562 * 19 18 17 21 21 O 1.44423 * 110.37677 * 64.61771 * 9 7 2 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.50974 * 335.82763 * 11 9 7 24 24 H 1.08993 * 110.51621 * 98.40584 * 11 9 7 25 25 H 1.09000 * 110.51105 * 118.64306 * 12 11 9 26 26 H 1.09000 * 110.50844 * 241.35294 * 12 11 9 27 27 H 1.07997 * 120.78914 * 0.02725 * 16 15 13 28 28 H 1.08001 * 120.41781 * 180.21815 * 17 16 15 29 29 H 1.08002 * 119.61833 * 179.74060 * 18 17 16 30 30 H 1.07999 * 119.61980 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8906 -0.6481 -0.8639 11 6 4.0493 -2.6423 -0.0014 12 6 5.2990 -2.5795 0.9052 13 6 5.3688 -1.1007 1.3464 14 1 6.0342 -0.5399 0.6902 15 6 5.8365 -1.0013 2.7755 16 6 7.1586 -0.6961 3.0619 17 6 7.5429 -0.6106 4.3912 18 6 6.6048 -0.8414 5.3797 19 7 5.3571 -1.1343 5.0702 20 6 4.9550 -1.2192 3.8171 21 8 4.0139 -0.6145 1.2238 22 1 -0.4850 0.8401 0.0004 23 1 3.3089 -3.3250 0.4156 24 1 4.3225 -2.9473 -1.0114 25 1 5.1765 -3.2312 1.7702 26 1 6.1923 -2.8527 0.3435 27 1 7.8709 -0.5252 2.2683 28 1 8.5636 -0.3714 4.6510 29 1 6.8972 -0.7808 6.4176 30 1 3.9245 -1.4610 3.6023 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225100975.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:38 Heat of formation + Delta-G solvation = -12.396323 kcal Electronic energy + Delta-G solvation = -14562.772286 eV Core-core repulsion = 12129.911449 eV Total energy + Delta-G solvation = -2432.860838 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10380 -38.24879 -33.14036 -32.32878 -31.44478 -31.12464 -28.37454 -25.02231 -23.36343 -22.64290 -20.82214 -19.97309 -17.24764 -16.85264 -16.23935 -15.42909 -15.23250 -14.37496 -13.98454 -13.69659 -13.52211 -12.98497 -12.91775 -12.60082 -12.18309 -11.74975 -11.02847 -10.96653 -10.79289 -10.38402 -10.00217 -9.73347 -9.63550 -9.51201 -9.21957 -8.78507 -8.65496 -8.52169 -6.14841 -4.24023 1.28626 1.42745 3.38606 3.43746 3.52675 3.97235 4.43676 4.53545 4.72774 4.94305 5.08124 5.14031 5.23255 5.36442 5.42479 5.48799 5.68591 5.83678 5.99503 6.08142 6.11918 6.23313 6.39020 6.46464 6.58483 6.64645 6.91231 7.08417 7.54974 8.01175 8.19385 8.39728 8.86173 9.47446 10.95472 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.009179 C = 0.008407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.559928 B = 3049.779669 C = 3329.870204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.084 3.916 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.297 1.297 7 C -0.516 4.516 8 H 0.082 0.918 9 C 0.164 3.836 10 H 0.032 0.968 11 C -0.135 4.135 12 C -0.142 4.142 13 C 0.107 3.893 14 H 0.064 0.936 15 C -0.120 4.120 16 C -0.075 4.075 17 C -0.180 4.180 18 C 0.086 3.914 19 N -0.488 5.488 20 C 0.127 3.873 21 O -0.370 6.370 22 H 0.267 0.733 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.150 0.850 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.070 -1.926 4.685 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.121 4.121 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.224 1.224 7 C -0.553 4.553 8 H 0.099 0.901 9 C 0.109 3.891 10 H 0.050 0.950 11 C -0.173 4.173 12 C -0.180 4.180 13 C 0.048 3.952 14 H 0.082 0.918 15 C -0.122 4.122 16 C -0.101 4.101 17 C -0.200 4.200 18 C -0.071 4.071 19 N -0.196 5.196 20 C -0.030 4.030 21 O -0.291 6.291 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.168 0.832 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 14.184 -1.836 5.502 15.324 hybrid contribution 1.182 0.955 -0.764 1.701 sum 15.365 -0.881 4.738 16.103 Atomic orbital electron populations 1.69918 1.06533 1.27506 1.48676 1.25076 0.94732 0.99746 0.92581 0.86463 0.79573 0.82388 0.78884 1.19897 1.19275 1.22378 1.20965 0.87302 0.94913 1.52120 0.90050 1.21154 0.95649 0.88517 0.83766 0.95027 1.22865 0.95727 1.00376 0.98321 1.22935 0.99020 0.96031 1.00014 1.21578 0.88716 0.94378 0.90506 0.91797 1.20910 0.94283 0.99979 0.97074 1.21402 0.95442 0.96420 0.96853 1.22019 1.01056 1.03245 0.93635 1.22738 0.88974 0.95720 0.99675 1.67777 1.17517 1.12514 1.21801 1.22856 1.00649 0.92943 0.86556 1.89392 1.22579 1.71169 1.45945 0.92369 0.90890 0.92060 0.91425 0.91658 0.85109 0.85142 0.83221 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 3 Si 0.90 23.00 26.49 -169.99 -4.50 18.50 16 4 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.27 -6.59 6.48 56.52 0.37 -6.22 16 6 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 7 C -0.52 -14.55 9.35 -34.44 -0.32 -14.87 16 8 H 0.08 2.43 7.81 -52.49 -0.41 2.02 16 9 C 0.16 3.89 2.50 -27.11 -0.07 3.82 16 10 H 0.03 0.76 7.07 -51.93 -0.37 0.39 16 11 C -0.14 -2.60 6.62 -25.16 -0.17 -2.77 16 12 C -0.14 -2.32 6.62 -25.16 -0.17 -2.49 16 13 C 0.11 1.94 3.51 -27.11 -0.10 1.85 16 14 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 15 C -0.12 -2.01 4.94 -104.48 -0.52 -2.53 16 16 C -0.08 -1.01 9.85 -39.27 -0.39 -1.40 16 17 C -0.18 -2.16 10.11 -39.44 -0.40 -2.56 16 18 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 19 N -0.49 -8.28 10.36 -13.25 -0.14 -8.42 16 20 C 0.13 2.28 10.54 -17.55 -0.18 2.10 16 21 O -0.37 -8.62 8.48 -35.23 -0.30 -8.92 16 22 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 23 H 0.07 1.46 7.71 -51.93 -0.40 1.06 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.08 7.86 -51.93 -0.41 0.67 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 30 H 0.17 3.21 7.69 -52.49 -0.40 2.81 16 LS Contribution 255.64 15.07 3.85 3.85 Total: -1.00 -31.54 255.64 -6.60 -38.15 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -3.69 Total: -1.22 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.60 Total: -15.55 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.64 Total: -34.81 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.30 Total: -8.92 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.50 Total: 18.50 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.54 -6.60 -38.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225100975.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.750 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds