Wall clock time and date at job start Mon Mar 30 2020 03:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.08999 * 110.33113 * 302.24628 * 9 7 2 11 11 C 1.54484 * 110.36901 * 180.02562 * 9 7 2 12 12 C 1.54517 * 104.05923 * 217.18734 * 11 9 7 13 13 C 1.54479 * 104.06216 * 359.97438 * 12 11 9 14 14 H 1.08999 * 110.37499 * 265.14864 * 13 12 11 15 15 C 1.50699 * 110.36888 * 142.91999 * 13 12 11 16 16 C 1.38680 * 120.41535 * 99.71907 * 15 13 12 17 17 C 1.38634 * 118.41677 * 179.77961 * 16 15 13 18 18 C 1.38224 * 119.16240 * 0.52087 * 17 16 15 19 19 N 1.31850 * 120.76381 * 359.72194 * 18 17 16 20 20 C 1.31884 * 121.72678 * 0.02562 * 19 18 17 21 21 O 1.44423 * 110.37677 * 64.61771 * 9 7 2 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.50974 * 335.82763 * 11 9 7 24 24 H 1.08993 * 110.51621 * 98.40584 * 11 9 7 25 25 H 1.09000 * 110.51105 * 118.64306 * 12 11 9 26 26 H 1.09000 * 110.50844 * 241.35294 * 12 11 9 27 27 H 1.07997 * 120.78914 * 0.02725 * 16 15 13 28 28 H 1.08001 * 120.41781 * 180.21815 * 17 16 15 29 29 H 1.08002 * 119.61833 * 179.74060 * 18 17 16 30 30 H 1.07999 * 119.61980 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8906 -0.6481 -0.8639 11 6 4.0493 -2.6423 -0.0014 12 6 5.2990 -2.5795 0.9052 13 6 5.3688 -1.1007 1.3464 14 1 6.0342 -0.5399 0.6902 15 6 5.8365 -1.0013 2.7755 16 6 7.1586 -0.6961 3.0619 17 6 7.5429 -0.6106 4.3912 18 6 6.6048 -0.8414 5.3797 19 7 5.3571 -1.1343 5.0702 20 6 4.9550 -1.2192 3.8171 21 8 4.0139 -0.6145 1.2238 22 1 -0.4850 0.8401 0.0004 23 1 3.3089 -3.3250 0.4156 24 1 4.3225 -2.9473 -1.0114 25 1 5.1765 -3.2312 1.7702 26 1 6.1923 -2.8527 0.3435 27 1 7.8709 -0.5252 2.2683 28 1 8.5636 -0.3714 4.6510 29 1 6.8972 -0.7808 6.4176 30 1 3.9245 -1.4610 3.6023 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225100975.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:38 Heat of formation + Delta-G solvation = -33.838600 kcal Electronic energy + Delta-G solvation = -14563.702093 eV Core-core repulsion = 12129.911449 eV Total energy + Delta-G solvation = -2433.790644 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.31067 -39.77719 -34.98345 -33.87073 -32.75668 -32.59580 -30.04764 -26.68838 -24.52328 -24.05598 -22.30690 -21.55972 -19.24703 -18.03435 -17.53867 -17.00919 -16.72718 -16.05350 -15.51946 -14.95294 -14.81295 -14.72726 -14.46773 -13.96286 -13.75262 -13.17440 -12.92118 -12.55315 -12.25207 -12.11459 -11.78056 -11.54561 -11.33272 -10.89531 -10.73123 -10.50725 -10.26434 -9.85369 -8.38824 -6.51449 0.16678 0.35491 1.31610 1.39801 1.47440 2.32878 2.75337 2.92142 3.40727 3.58206 3.83132 3.90382 4.02301 4.09370 4.16786 4.22904 4.45421 4.48925 4.65951 4.72676 4.88457 4.96042 5.00285 5.17026 5.20717 5.35698 5.41884 5.51080 5.80697 6.17671 6.31248 6.64291 7.05549 7.23652 8.75610 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.009179 C = 0.008407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.559928 B = 3049.779669 C = 3329.870204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.028 3.972 3 Si 0.960 3.040 4 H -0.284 1.284 5 H -0.247 1.247 6 H -0.288 1.288 7 C -0.525 4.525 8 H 0.044 0.956 9 C 0.162 3.838 10 H 0.037 0.963 11 C -0.133 4.133 12 C -0.128 4.128 13 C 0.101 3.899 14 H 0.087 0.913 15 C -0.137 4.137 16 C -0.069 4.069 17 C -0.161 4.161 18 C 0.080 3.920 19 N -0.519 5.519 20 C 0.096 3.904 21 O -0.400 6.400 22 H 0.269 0.731 23 H 0.052 0.948 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.167 0.833 28 H 0.178 0.822 29 H 0.184 0.816 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.417 -1.215 4.904 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.172 4.172 3 Si 0.786 3.214 4 H -0.211 1.211 5 H -0.170 1.170 6 H -0.215 1.215 7 C -0.563 4.563 8 H 0.062 0.938 9 C 0.107 3.893 10 H 0.054 0.946 11 C -0.171 4.171 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.105 0.895 15 C -0.139 4.139 16 C -0.095 4.095 17 C -0.181 4.181 18 C -0.077 4.077 19 N -0.228 5.228 20 C -0.060 4.060 21 O -0.322 6.322 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.124 0.876 27 H 0.184 0.816 28 H 0.195 0.805 29 H 0.200 0.800 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.541 -1.144 5.708 19.433 hybrid contribution -0.092 0.661 -0.712 0.976 sum 18.449 -0.483 4.995 19.119 Atomic orbital electron populations 1.70043 1.08183 1.28442 1.50990 1.25921 0.95431 1.03348 0.92540 0.85488 0.79257 0.78307 0.78329 1.21068 1.17017 1.21508 1.21291 0.90361 0.93433 1.51181 0.93755 1.20997 0.92752 0.91453 0.84113 0.94587 1.22794 0.96669 0.97122 1.00480 1.22885 0.98906 0.95152 0.99659 1.21891 0.86318 0.95334 0.92188 0.89495 1.20843 0.95777 1.01685 0.95599 1.21812 0.94253 0.94712 0.98697 1.22513 1.02703 1.00389 0.92452 1.23415 0.87961 0.94400 1.01967 1.67696 1.19905 1.13820 1.21356 1.22452 0.99837 0.95723 0.87963 1.89284 1.25968 1.71655 1.45244 0.92207 0.92947 0.89585 0.91580 0.87597 0.81591 0.80500 0.79952 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.71 13.96 21.45 0.30 -59.41 16 2 C 0.03 1.66 5.47 84.66 0.46 2.12 16 3 Si 0.96 48.17 26.49 68.60 1.82 49.98 16 4 H -0.28 -14.66 7.11 99.48 0.71 -13.96 16 5 H -0.25 -11.37 6.48 99.48 0.64 -10.73 16 6 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 7 C -0.53 -30.83 9.35 25.60 0.24 -30.59 16 8 H 0.04 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.16 7.68 2.50 30.35 0.08 7.75 16 10 H 0.04 1.68 7.07 -2.39 -0.02 1.66 16 11 C -0.13 -5.01 6.62 31.61 0.21 -4.80 16 12 C -0.13 -3.88 6.62 31.61 0.21 -3.67 16 13 C 0.10 3.42 3.51 30.35 0.11 3.53 16 14 H 0.09 2.54 8.08 -2.39 -0.02 2.52 16 15 C -0.14 -4.30 4.94 -19.77 -0.10 -4.40 16 16 C -0.07 -1.54 9.85 22.47 0.22 -1.32 16 17 C -0.16 -3.04 10.11 22.36 0.23 -2.81 16 18 C 0.08 1.88 11.18 84.69 0.95 2.83 16 19 N -0.52 -17.30 10.36 -195.85 -2.03 -19.33 16 20 C 0.10 3.50 10.54 84.67 0.89 4.40 16 21 O -0.40 -18.57 8.48 -148.98 -1.26 -19.83 16 22 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 23 H 0.05 2.15 7.71 -2.39 -0.02 2.14 16 24 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.07 2.01 7.86 -2.39 -0.02 1.99 16 26 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 28 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 29 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.13 5.46 7.69 -2.91 -0.02 5.44 16 Total: -1.00 -72.76 255.64 3.38 -69.39 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.06 Total: 6.16 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 3.49 Total: -26.95 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.73 Total: -78.74 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -1.26 Total: -19.83 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.82 Total: 49.98 kcal Total: -72.76 3.38 -69.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225100975.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.547 kcal (2) G-P(sol) polarization free energy of solvation -72.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds