Wall clock time and date at job start Mon Mar 30 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 119.99731 * 2 1 4 4 H 1.48508 * 109.47380 * 270.00081 * 3 2 1 5 5 H 1.48501 * 109.47425 * 30.00105 * 3 2 1 6 6 H 1.48498 * 109.46837 * 150.00346 * 3 2 1 7 7 C 1.38648 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00071 * 359.97438 * 7 2 1 9 9 O 1.34828 * 120.00114 * 179.97438 * 7 2 1 10 10 C 1.35754 * 117.00243 * 185.05481 * 9 7 2 11 11 C 1.38893 * 120.10512 * 354.46794 * 10 9 7 12 12 C 1.37955 * 119.86466 * 179.97438 * 11 10 9 13 13 C 1.38584 * 120.30712 * 0.02562 * 12 11 10 14 14 C 1.38293 * 119.96017 * 359.96945 * 13 12 11 15 15 C 1.38373 * 119.92087 * 0.05297 * 14 13 12 16 16 C 1.51385 * 109.75131 * 180.02562 * 14 13 12 17 17 C 1.54335 * 105.17342 * 17.21830 * 16 14 13 18 18 C 1.51393 * 130.30847 * 179.97438 * 13 12 11 19 19 H 1.09002 * 110.28848 * 281.71554 * 18 13 12 20 20 N 1.46905 * 110.31645 * 43.86054 * 18 13 12 21 21 H 0.97004 * 119.99947 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.06557 * 359.95888 * 11 10 9 23 23 H 1.07998 * 119.84534 * 179.72697 * 12 11 10 24 24 H 1.07994 * 119.92114 * 179.97438 * 15 14 13 25 25 H 1.09004 * 110.30208 * 136.14055 * 16 14 13 26 26 H 1.08997 * 110.30226 * 258.29215 * 16 14 13 27 27 H 1.08994 * 110.82627 * 91.85490 * 17 16 14 28 28 H 1.08998 * 110.81916 * 215.20643 * 17 16 14 29 29 H 1.00905 * 110.99730 * 295.76926 * 20 18 13 30 30 H 1.00900 * 110.99549 * 59.71360 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1081 11 6 3.2241 -3.5750 -0.0953 12 6 3.8554 -4.7967 -0.2049 13 6 5.2343 -4.8628 -0.3274 14 6 5.9830 -3.7002 -0.3406 15 6 5.3538 -2.4727 -0.2304 16 6 7.4515 -4.0390 -0.4837 17 6 7.4822 -5.4951 -0.9944 18 6 6.1493 -6.0616 -0.4601 19 1 6.2997 -6.5317 0.5117 20 7 5.5885 -7.0282 -1.4137 21 1 -0.4850 0.8401 -0.0004 22 1 2.1493 -3.5279 0.0007 23 1 3.2729 -5.7060 -0.1904 24 1 5.9385 -1.5649 -0.2403 25 1 7.9243 -3.3745 -1.2069 26 1 7.9522 -3.9662 0.4818 27 1 7.5070 -5.5232 -2.0837 28 1 8.3313 -6.0349 -0.5752 29 1 4.7159 -7.4053 -1.0753 30 1 5.4730 -6.6114 -2.3252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232410729.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:24 Heat of formation + Delta-G solvation = -8.068009 kcal Electronic energy + Delta-G solvation = -14243.983579 eV Core-core repulsion = 11811.310431 eV Total energy + Delta-G solvation = -2432.673148 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.84419 -38.03099 -34.74519 -32.56875 -32.38425 -29.55582 -27.92865 -25.79636 -24.52325 -22.27239 -20.37864 -20.03715 -17.76214 -17.04270 -15.99015 -15.40453 -14.90985 -14.55988 -14.18779 -13.78003 -13.63459 -12.76753 -12.72070 -12.51597 -12.09717 -11.84258 -11.46328 -11.39116 -11.14662 -10.95594 -10.66532 -10.36010 -10.16358 -9.43369 -8.91382 -8.64562 -8.17863 -7.32574 -6.45796 -4.12865 2.02168 2.13472 3.18940 3.22681 3.37262 4.20046 4.35508 4.55164 4.65013 4.96665 5.03124 5.08033 5.28782 5.50718 5.55032 5.70867 5.87065 5.92073 6.02248 6.06831 6.22868 6.29091 6.48876 6.77928 6.98131 7.08517 7.22850 7.32536 7.52363 7.54193 7.74771 7.99121 8.89204 9.50974 10.61746 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053379 B = 0.007093 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.426742 B = 3946.674510 C = 4394.422038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.391 4.391 8 H 0.106 0.894 9 O -0.216 6.216 10 C 0.165 3.835 11 C -0.220 4.220 12 C -0.057 4.057 13 C -0.228 4.228 14 C -0.052 4.052 15 C -0.181 4.181 16 C -0.080 4.080 17 C -0.109 4.109 18 C 0.143 3.857 19 H 0.082 0.918 20 N -0.842 5.842 21 H 0.280 0.720 22 H 0.135 0.865 23 H 0.104 0.896 24 H 0.115 0.885 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.338 0.662 30 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.966 -7.974 -1.312 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.112 3.888 11 C -0.239 4.239 12 C -0.076 4.076 13 C -0.230 4.230 14 C -0.053 4.053 15 C -0.201 4.201 16 C -0.117 4.117 17 C -0.147 4.147 18 C 0.031 3.969 19 H 0.100 0.900 20 N -0.369 5.369 21 H 0.090 0.910 22 H 0.152 0.848 23 H 0.123 0.877 24 H 0.133 0.867 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.511 -8.044 -1.153 14.091 hybrid contribution -0.897 1.443 0.003 1.699 sum 10.615 -6.601 -1.149 12.553 Atomic orbital electron populations 1.69646 1.05561 1.28550 1.47872 1.24465 0.95035 0.98849 0.95606 0.86178 0.80330 0.81390 0.78996 1.19848 1.20701 1.18370 1.20762 0.76809 0.96655 1.52412 0.87647 1.83565 1.22658 1.25589 1.80292 1.18916 0.91403 0.85543 0.92903 1.21175 1.01075 0.91680 1.09984 1.20177 0.92713 0.96682 0.98008 1.20944 0.93933 0.96311 1.11831 1.19988 0.94878 0.92511 0.97944 1.19589 0.91769 0.96918 1.11780 1.21004 0.92988 0.96377 1.01339 1.22298 0.96719 0.94671 1.01012 1.20767 0.92142 0.88410 0.95553 0.89960 1.59080 1.33637 1.38221 1.05957 0.90995 0.84776 0.87746 0.86712 0.91070 0.90523 0.90984 0.90845 0.84973 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.96 55.48 0.77 -24.54 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.65 28.62 -169.99 -4.86 16.78 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.39 -11.02 9.95 30.88 0.31 -10.72 16 8 H 0.11 3.03 5.44 -52.48 -0.29 2.75 16 9 O -0.22 -5.73 8.59 0.04 0.00 -5.73 16 10 C 0.16 3.83 6.64 -39.15 -0.26 3.57 16 11 C -0.22 -4.76 9.17 -39.44 -0.36 -5.12 16 12 C -0.06 -1.04 9.94 -39.56 -0.39 -1.43 16 13 C -0.23 -3.79 5.77 -104.13 -0.60 -4.39 16 14 C -0.05 -0.91 6.13 -104.22 -0.64 -1.55 16 15 C -0.18 -3.66 9.99 -39.35 -0.39 -4.06 16 16 C -0.08 -1.05 6.77 -26.85 -0.18 -1.23 16 17 C -0.11 -1.29 6.75 -25.31 -0.17 -1.46 16 18 C 0.14 1.91 4.00 -67.80 -0.27 1.64 16 19 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 20 N -0.84 -10.15 9.27 -4.74 -0.04 -10.20 16 21 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.13 3.04 5.65 -52.48 -0.30 2.74 16 23 H 0.10 1.62 8.05 -52.49 -0.42 1.19 16 24 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.83 7.98 -51.93 -0.41 0.42 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.34 3.80 9.01 -39.29 -0.35 3.45 16 30 H 0.34 4.03 8.87 -39.29 -0.35 3.68 16 LS Contribution 256.30 15.07 3.86 3.86 Total: -1.00 -29.08 256.30 -6.70 -35.78 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -3.37 Total: 7.10 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.06 Total: -23.06 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.73 Total: -34.73 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: 0.00 Total: -5.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.86 Total: 16.78 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.08 -6.70 -35.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232410729.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.711 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds