Wall clock time and date at job start Mon Mar 30 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 119.99731 * 2 1 4 4 H 1.48508 * 109.47380 * 270.00081 * 3 2 1 5 5 H 1.48501 * 109.47425 * 30.00105 * 3 2 1 6 6 H 1.48498 * 109.46837 * 150.00346 * 3 2 1 7 7 C 1.38648 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00071 * 359.97438 * 7 2 1 9 9 O 1.34828 * 120.00114 * 179.97438 * 7 2 1 10 10 C 1.35754 * 117.00243 * 185.05481 * 9 7 2 11 11 C 1.38893 * 120.10512 * 354.46794 * 10 9 7 12 12 C 1.37955 * 119.86466 * 179.97438 * 11 10 9 13 13 C 1.38584 * 120.30712 * 0.02562 * 12 11 10 14 14 C 1.38293 * 119.96017 * 359.96945 * 13 12 11 15 15 C 1.38373 * 119.92087 * 0.05297 * 14 13 12 16 16 C 1.51385 * 109.75131 * 180.02562 * 14 13 12 17 17 C 1.54335 * 105.17342 * 17.21830 * 16 14 13 18 18 C 1.51393 * 130.30847 * 179.97438 * 13 12 11 19 19 H 1.09002 * 110.28848 * 281.71554 * 18 13 12 20 20 N 1.46905 * 110.31645 * 43.86054 * 18 13 12 21 21 H 0.97004 * 119.99947 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.06557 * 359.95888 * 11 10 9 23 23 H 1.07998 * 119.84534 * 179.72697 * 12 11 10 24 24 H 1.07994 * 119.92114 * 179.97438 * 15 14 13 25 25 H 1.09004 * 110.30208 * 136.14055 * 16 14 13 26 26 H 1.08997 * 110.30226 * 258.29215 * 16 14 13 27 27 H 1.08994 * 110.82627 * 91.85490 * 17 16 14 28 28 H 1.08998 * 110.81916 * 215.20643 * 17 16 14 29 29 H 1.00905 * 110.99730 * 295.76926 * 20 18 13 30 30 H 1.00900 * 110.99549 * 59.71360 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1081 11 6 3.2241 -3.5750 -0.0953 12 6 3.8554 -4.7967 -0.2049 13 6 5.2343 -4.8628 -0.3274 14 6 5.9830 -3.7002 -0.3406 15 6 5.3538 -2.4727 -0.2304 16 6 7.4515 -4.0390 -0.4837 17 6 7.4822 -5.4951 -0.9944 18 6 6.1493 -6.0616 -0.4601 19 1 6.2997 -6.5317 0.5117 20 7 5.5885 -7.0282 -1.4137 21 1 -0.4850 0.8401 -0.0004 22 1 2.1493 -3.5279 0.0007 23 1 3.2729 -5.7060 -0.1904 24 1 5.9385 -1.5649 -0.2403 25 1 7.9243 -3.3745 -1.2069 26 1 7.9522 -3.9662 0.4818 27 1 7.5070 -5.5232 -2.0837 28 1 8.3313 -6.0349 -0.5752 29 1 4.7159 -7.4053 -1.0753 30 1 5.4730 -6.6114 -2.3252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232410729.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:24 Heat of formation + Delta-G solvation = -27.799049 kcal Electronic energy + Delta-G solvation = -14244.839181 eV Core-core repulsion = 11811.310431 eV Total energy + Delta-G solvation = -2433.528750 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.34949 -39.66300 -36.19159 -34.43585 -33.75845 -31.02780 -29.35804 -27.49572 -25.98453 -23.73255 -21.92298 -21.30104 -19.67921 -18.80287 -17.14318 -16.73841 -16.57410 -15.87950 -15.81644 -15.41101 -15.29016 -14.45409 -14.27821 -13.98844 -13.67304 -13.23950 -12.88360 -12.79232 -12.56555 -12.39573 -12.13054 -11.91205 -11.57299 -11.30718 -10.91210 -9.75235 -9.69241 -8.96269 -8.54024 -6.27304 0.45876 0.56053 1.28432 1.32464 1.48947 2.24750 2.68553 2.90755 3.05821 3.55302 3.70977 3.95880 4.06761 4.21458 4.34484 4.43907 4.52910 4.69624 4.76307 4.86042 5.03095 5.12133 5.28746 5.31972 5.38247 5.55071 5.68063 5.71758 5.85411 6.17579 6.24627 6.57757 6.79872 7.53235 8.57545 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.053379 B = 0.007093 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.426742 B = 3946.674510 C = 4394.422038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.402 4.402 8 H 0.080 0.920 9 O -0.244 6.244 10 C 0.125 3.875 11 C -0.239 4.239 12 C -0.059 4.059 13 C -0.209 4.209 14 C -0.054 4.054 15 C -0.187 4.187 16 C -0.077 4.077 17 C -0.101 4.101 18 C 0.144 3.856 19 H 0.095 0.905 20 N -0.836 5.836 21 H 0.286 0.714 22 H 0.110 0.890 23 H 0.132 0.868 24 H 0.123 0.877 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.344 0.656 30 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.159 -9.382 -1.645 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.478 4.478 8 H 0.098 0.902 9 O -0.152 6.152 10 C 0.076 3.924 11 C -0.259 4.259 12 C -0.077 4.077 13 C -0.211 4.211 14 C -0.055 4.055 15 C -0.206 4.206 16 C -0.114 4.114 17 C -0.139 4.139 18 C 0.033 3.967 19 H 0.113 0.887 20 N -0.363 5.363 21 H 0.095 0.905 22 H 0.128 0.872 23 H 0.150 0.850 24 H 0.141 0.859 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.157 0.843 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.727 -9.499 -1.494 17.588 hybrid contribution -1.707 1.549 0.082 2.307 sum 13.020 -7.951 -1.412 15.321 Atomic orbital electron populations 1.69727 1.06873 1.29690 1.49930 1.25284 0.95903 1.02166 0.95404 0.85214 0.78751 0.77372 0.79347 1.18988 1.18943 1.18861 1.20705 0.78013 0.96166 1.52964 0.90220 1.83505 1.21310 1.27265 1.83078 1.19449 0.92874 0.85172 0.94937 1.21176 1.00146 0.93069 1.11468 1.20435 0.94004 0.96169 0.97076 1.21605 0.93517 0.98242 1.07746 1.20600 0.97808 0.91345 0.95737 1.19865 0.90525 0.98821 1.11374 1.21151 0.89634 0.97610 1.03017 1.22339 0.96518 0.93540 1.01504 1.20922 0.92031 0.87043 0.96750 0.88746 1.59083 1.34132 1.37306 1.05812 0.90470 0.87232 0.85039 0.85890 0.89550 0.88551 0.90429 0.88049 0.84330 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.40 13.96 21.61 0.30 -55.10 16 2 C 0.01 0.64 5.49 84.83 0.47 1.11 16 3 Si 0.97 45.82 28.62 68.60 1.96 47.78 16 4 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.40 -24.10 9.95 67.92 0.68 -23.42 16 8 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 9 O -0.24 -13.56 8.59 -22.76 -0.20 -13.76 16 10 C 0.12 6.01 6.64 22.55 0.15 6.16 16 11 C -0.24 -10.79 9.17 22.36 0.20 -10.58 16 12 C -0.06 -2.06 9.94 22.29 0.22 -1.84 16 13 C -0.21 -6.36 5.77 -19.55 -0.11 -6.47 16 14 C -0.05 -1.73 6.13 -19.60 -0.12 -1.85 16 15 C -0.19 -7.45 9.99 22.42 0.22 -7.23 16 16 C -0.08 -1.66 6.77 30.52 0.21 -1.45 16 17 C -0.10 -1.85 6.75 31.51 0.21 -1.64 16 18 C 0.14 3.20 4.00 44.85 0.18 3.38 16 19 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 20 N -0.84 -16.74 9.27 -168.91 -1.57 -18.31 16 21 H 0.29 15.70 8.31 -92.71 -0.77 14.92 16 22 H 0.11 5.41 5.65 -2.91 -0.02 5.39 16 23 H 0.13 3.84 8.05 -2.91 -0.02 3.82 16 24 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 1.38 7.98 -2.39 -0.02 1.36 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.34 6.45 9.01 -89.69 -0.81 5.64 16 30 H 0.34 6.81 8.87 -89.69 -0.80 6.01 16 Total: -1.00 -66.08 256.30 2.38 -63.70 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.43 Total: 19.51 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 2.31 Total: -43.82 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -1.26 Total: -73.41 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.20 Total: -13.76 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.96 Total: 47.78 kcal Total: -66.08 2.38 -63.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232410729.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.896 kcal (2) G-P(sol) polarization free energy of solvation -66.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds