Wall clock time and date at job start Mon Mar 30 2020 02:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 119.99808 * 2 1 4 4 H 1.48503 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47014 * 299.99815 * 3 2 1 6 6 H 1.48506 * 109.47226 * 60.00034 * 3 2 1 7 7 C 1.38658 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99539 * 180.02562 * 7 2 1 9 9 O 1.34820 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00041 * 185.03491 * 9 7 2 11 11 C 1.38898 * 120.10520 * 354.17804 * 10 9 7 12 12 C 1.37960 * 119.85936 * 179.70212 * 11 10 9 13 13 C 1.38580 * 120.31291 * 0.58497 * 12 11 10 14 14 C 1.38302 * 119.95674 * 359.69392 * 13 12 11 15 15 C 1.38371 * 119.91728 * 0.02562 * 14 13 12 16 16 C 1.51379 * 109.74747 * 180.02562 * 14 13 12 17 17 C 1.54335 * 105.17532 * 342.79766 * 16 14 13 18 18 C 1.51391 * 130.31144 * 179.71599 * 13 12 11 19 19 H 1.09000 * 110.30336 * 78.26447 * 18 13 12 20 20 N 1.46909 * 110.30172 * 316.11517 * 18 13 12 21 21 H 0.96999 * 120.00308 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.06449 * 359.97056 * 11 10 9 23 23 H 1.08004 * 119.83699 * 180.27643 * 12 11 10 24 24 H 1.07998 * 119.91624 * 179.97438 * 15 14 13 25 25 H 1.09003 * 110.30595 * 101.72303 * 16 14 13 26 26 H 1.09005 * 110.29909 * 223.87435 * 16 14 13 27 27 H 1.09008 * 110.82087 * 268.15407 * 17 16 14 28 28 H 1.08997 * 110.99368 * 144.68291 * 17 16 14 29 29 H 1.00898 * 110.99320 * 61.45031 * 20 18 13 30 30 H 1.00892 * 111.00134 * 185.40454 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1072 11 6 3.4574 -3.4408 0.0884 12 6 4.1998 -4.5980 0.2034 13 6 3.5677 -5.8252 0.3255 14 6 2.1864 -5.8924 0.3387 15 6 1.4381 -4.7336 0.2294 16 6 1.7457 -7.3336 0.4812 17 6 2.9872 -8.1738 0.1144 18 6 4.1484 -7.2171 0.4580 19 1 4.4900 -7.3887 1.4788 20 7 5.2567 -7.3993 -0.4889 21 1 -0.4850 0.8400 -0.0004 22 1 3.9540 -2.4870 -0.0116 23 1 5.2786 -4.5476 0.1933 24 1 0.3594 -4.7861 0.2393 25 1 1.4417 -7.5364 1.5081 26 1 0.9272 -7.5484 -0.2059 27 1 2.9891 -8.4192 -0.9477 28 1 3.0389 -9.0789 0.7195 29 1 6.0034 -6.7471 -0.3013 30 1 5.5942 -8.3500 -0.4719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232410731.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:28 Heat of formation + Delta-G solvation = -6.978408 kcal Electronic energy + Delta-G solvation = -14189.453208 eV Core-core repulsion = 11756.827309 eV Total energy + Delta-G solvation = -2432.625899 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.61634 -37.75089 -34.63869 -32.50873 -32.16870 -29.44865 -27.72010 -25.74294 -24.57455 -22.06187 -20.44831 -19.82728 -17.64483 -16.72089 -15.73705 -15.44139 -15.01196 -14.38419 -13.95044 -13.77864 -13.55460 -13.24755 -12.48908 -12.22225 -11.85599 -11.58731 -11.36189 -11.23084 -11.05666 -10.80349 -10.43242 -10.39044 -10.27278 -9.28291 -8.82774 -8.57333 -7.98632 -7.09550 -6.42431 -4.01238 2.20757 2.35625 3.13774 3.15156 3.20843 3.98031 4.50014 4.73737 4.80857 4.97391 5.11435 5.24968 5.37920 5.66576 5.70299 5.83086 5.86801 6.03853 6.09173 6.22709 6.34618 6.45241 6.69615 6.99532 7.05386 7.24971 7.31268 7.44242 7.46929 7.55415 7.84850 8.02841 9.03391 9.74226 10.75915 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.056518 B = 0.006669 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.300712 B = 4197.584117 C = 4637.599368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.158 3.842 11 C -0.233 4.233 12 C -0.050 4.050 13 C -0.185 4.185 14 C -0.053 4.053 15 C -0.181 4.181 16 C -0.076 4.076 17 C -0.114 4.114 18 C 0.143 3.857 19 H 0.037 0.963 20 N -0.841 5.841 21 H 0.269 0.731 22 H 0.128 0.872 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.339 0.661 30 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 -11.241 1.488 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.105 3.895 11 C -0.252 4.252 12 C -0.069 4.069 13 C -0.186 4.186 14 C -0.053 4.053 15 C -0.200 4.200 16 C -0.113 4.113 17 C -0.152 4.152 18 C 0.032 3.968 19 H 0.054 0.946 20 N -0.370 5.370 21 H 0.079 0.921 22 H 0.146 0.854 23 H 0.120 0.880 24 H 0.133 0.867 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.152 0.848 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.311 -10.827 0.909 12.565 hybrid contribution 1.115 0.715 0.839 1.568 sum 7.426 -10.112 1.747 12.667 Atomic orbital electron populations 1.70048 1.05947 1.27498 1.46408 1.25285 0.95842 0.98798 0.96639 0.85647 0.79122 0.80413 0.78230 1.19129 1.20150 1.20161 1.21370 0.91807 0.80806 1.52726 0.89055 1.83968 1.34256 1.11362 1.78667 1.19163 0.90164 0.87868 0.92334 1.21053 0.93815 0.98634 1.11718 1.20101 0.98042 0.91075 0.97687 1.19790 0.93955 0.93123 1.11736 1.19923 0.93708 0.93528 0.98188 1.19551 0.99254 0.89386 1.11829 1.20925 0.97736 0.91227 1.01432 1.22353 0.93912 0.96766 1.02127 1.20612 0.91056 0.92627 0.92470 0.94581 1.58818 1.13093 1.08825 1.56269 0.92111 0.85411 0.88015 0.86702 0.90767 0.91010 0.90253 0.91633 0.84833 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.39 -11.11 9.49 30.89 0.29 -10.82 16 8 H 0.09 2.41 5.21 -52.48 -0.27 2.14 16 9 O -0.18 -5.22 9.76 0.07 0.00 -5.22 16 10 C 0.16 3.96 6.64 -39.15 -0.26 3.70 16 11 C -0.23 -5.25 9.17 -39.44 -0.36 -5.62 16 12 C -0.05 -0.98 9.86 -39.56 -0.39 -1.37 16 13 C -0.18 -3.38 5.79 -104.13 -0.60 -3.98 16 14 C -0.05 -1.00 6.13 -104.22 -0.64 -1.64 16 15 C -0.18 -4.02 9.99 -39.35 -0.39 -4.41 16 16 C -0.08 -1.10 6.77 -26.85 -0.18 -1.28 16 17 C -0.11 -1.45 6.75 -25.34 -0.17 -1.62 16 18 C 0.14 2.04 3.99 -67.82 -0.27 1.76 16 19 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 20 N -0.84 -10.49 9.24 -4.76 -0.04 -10.54 16 21 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.13 2.86 5.65 -52.49 -0.30 2.57 16 23 H 0.10 1.67 7.94 -52.48 -0.42 1.26 16 24 H 0.11 2.47 8.06 -52.49 -0.42 2.04 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.03 8.09 -51.92 -0.42 0.61 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.34 3.94 8.80 -39.29 -0.35 3.59 16 30 H 0.33 3.25 9.04 -39.30 -0.36 2.89 16 LS Contribution 257.28 15.07 3.88 3.88 Total: -1.00 -31.36 257.28 -6.86 -38.22 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.36 Total: 7.12 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -3.07 Total: -24.31 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.71 Total: -35.43 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: 0.00 Total: -5.22 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.36 -6.86 -38.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232410731.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.246 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds