Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 119.99808 * 2 1 4 4 H 1.48503 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47014 * 299.99815 * 3 2 1 6 6 H 1.48506 * 109.47226 * 60.00034 * 3 2 1 7 7 C 1.38658 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99539 * 180.02562 * 7 2 1 9 9 O 1.34820 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00041 * 185.03491 * 9 7 2 11 11 C 1.38898 * 120.10520 * 354.17804 * 10 9 7 12 12 C 1.37960 * 119.85936 * 179.70212 * 11 10 9 13 13 C 1.38580 * 120.31291 * 0.58497 * 12 11 10 14 14 C 1.38302 * 119.95674 * 359.69392 * 13 12 11 15 15 C 1.38371 * 119.91728 * 0.02562 * 14 13 12 16 16 C 1.51379 * 109.74747 * 180.02562 * 14 13 12 17 17 C 1.54335 * 105.17532 * 342.79766 * 16 14 13 18 18 C 1.51391 * 130.31144 * 179.71599 * 13 12 11 19 19 H 1.09000 * 110.30336 * 78.26447 * 18 13 12 20 20 N 1.46909 * 110.30172 * 316.11517 * 18 13 12 21 21 H 0.96999 * 120.00308 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.06449 * 359.97056 * 11 10 9 23 23 H 1.08004 * 119.83699 * 180.27643 * 12 11 10 24 24 H 1.07998 * 119.91624 * 179.97438 * 15 14 13 25 25 H 1.09003 * 110.30595 * 101.72303 * 16 14 13 26 26 H 1.09005 * 110.29909 * 223.87435 * 16 14 13 27 27 H 1.09008 * 110.82087 * 268.15407 * 17 16 14 28 28 H 1.08997 * 110.99368 * 144.68291 * 17 16 14 29 29 H 1.00898 * 110.99320 * 61.45031 * 20 18 13 30 30 H 1.00892 * 111.00134 * 185.40454 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1072 11 6 3.4574 -3.4408 0.0884 12 6 4.1998 -4.5980 0.2034 13 6 3.5677 -5.8252 0.3255 14 6 2.1864 -5.8924 0.3387 15 6 1.4381 -4.7336 0.2294 16 6 1.7457 -7.3336 0.4812 17 6 2.9872 -8.1738 0.1144 18 6 4.1484 -7.2171 0.4580 19 1 4.4900 -7.3887 1.4788 20 7 5.2567 -7.3993 -0.4889 21 1 -0.4850 0.8400 -0.0004 22 1 3.9540 -2.4870 -0.0116 23 1 5.2786 -4.5476 0.1933 24 1 0.3594 -4.7861 0.2393 25 1 1.4417 -7.5364 1.5081 26 1 0.9272 -7.5484 -0.2059 27 1 2.9891 -8.4192 -0.9477 28 1 3.0389 -9.0789 0.7195 29 1 6.0034 -6.7471 -0.3013 30 1 5.5942 -8.3500 -0.4719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232410731.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = -29.205736 kcal Electronic energy + Delta-G solvation = -14190.417057 eV Core-core repulsion = 11756.827309 eV Total energy + Delta-G solvation = -2433.589748 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.20288 -39.47052 -36.14921 -34.21708 -33.73337 -31.00909 -29.23082 -27.54361 -26.07057 -23.60127 -22.09184 -21.16385 -19.51410 -18.60017 -16.95436 -16.68726 -16.39760 -16.21719 -15.53844 -15.46400 -15.34578 -14.38247 -14.12934 -13.95445 -13.57781 -13.14547 -12.83307 -12.62678 -12.41050 -12.31872 -12.09854 -11.78397 -11.71693 -11.14988 -10.79215 -9.63061 -9.60758 -8.83266 -8.48198 -6.16721 0.54157 0.68086 1.34236 1.42904 1.53078 2.16732 2.78036 3.12283 3.31417 3.67563 3.79440 3.82863 4.16111 4.20602 4.36104 4.53034 4.57231 4.69789 4.84325 4.85264 5.00747 5.12029 5.15833 5.33583 5.43009 5.55397 5.70059 5.80846 6.01564 6.18374 6.32750 6.72759 6.96334 7.77152 8.75561 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.056518 B = 0.006669 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.300712 B = 4197.584117 C = 4637.599368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.021 2.979 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.117 3.883 11 C -0.245 4.245 12 C -0.052 4.052 13 C -0.172 4.172 14 C -0.058 4.058 15 C -0.199 4.199 16 C -0.077 4.077 17 C -0.104 4.104 18 C 0.144 3.856 19 H 0.056 0.944 20 N -0.847 5.847 21 H 0.273 0.727 22 H 0.121 0.879 23 H 0.136 0.864 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.345 0.655 30 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.727 -13.558 1.867 16.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.840 3.160 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.067 3.933 11 C -0.264 4.264 12 C -0.070 4.070 13 C -0.173 4.173 14 C -0.058 4.058 15 C -0.218 4.218 16 C -0.114 4.114 17 C -0.142 4.142 18 C 0.034 3.966 19 H 0.074 0.926 20 N -0.379 5.379 21 H 0.082 0.918 22 H 0.139 0.861 23 H 0.154 0.846 24 H 0.126 0.874 25 H 0.113 0.887 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.158 0.842 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.800 -13.215 1.287 15.929 hybrid contribution 0.451 1.092 0.739 1.394 sum 9.252 -12.123 2.026 15.384 Atomic orbital electron populations 1.70193 1.08065 1.28773 1.48990 1.26626 0.96889 1.02765 0.95819 0.84502 0.78179 0.74670 0.78645 1.17498 1.19236 1.19195 1.21873 0.92520 0.81410 1.53248 0.88164 1.83929 1.35904 1.12531 1.81622 1.19698 0.91524 0.87752 0.94333 1.21152 0.93056 0.99839 1.12362 1.20456 0.99685 0.90404 0.96431 1.20521 0.94045 0.95075 1.07671 1.20531 0.94280 0.94897 0.96112 1.19793 0.99459 0.89975 1.12609 1.21103 0.99240 0.88004 1.03048 1.22384 0.91585 0.97351 1.02871 1.20657 0.92240 0.89713 0.94033 0.92594 1.58718 1.13102 1.10498 1.55629 0.91798 0.86125 0.84581 0.87405 0.88725 0.90080 0.90370 0.87849 0.84165 0.83226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.75 13.67 21.61 0.30 -57.45 16 2 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 3 Si 1.02 43.69 29.55 68.60 2.03 45.72 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.41 -24.89 9.49 67.92 0.64 -24.25 16 8 H 0.10 5.55 5.21 -2.91 -0.02 5.53 16 9 O -0.23 -14.60 9.76 -22.65 -0.22 -14.82 16 10 C 0.12 6.17 6.64 22.55 0.15 6.32 16 11 C -0.24 -11.30 9.17 22.36 0.20 -11.10 16 12 C -0.05 -1.91 9.86 22.29 0.22 -1.69 16 13 C -0.17 -5.83 5.79 -19.55 -0.11 -5.94 16 14 C -0.06 -2.11 6.13 -19.60 -0.12 -2.23 16 15 C -0.20 -9.16 9.99 22.42 0.22 -8.93 16 16 C -0.08 -1.96 6.77 30.52 0.21 -1.75 16 17 C -0.10 -2.12 6.75 31.50 0.21 -1.91 16 18 C 0.14 3.42 3.99 44.84 0.18 3.60 16 19 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 20 N -0.85 -17.19 9.24 -168.98 -1.56 -18.76 16 21 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 22 H 0.12 5.60 5.65 -2.91 -0.02 5.59 16 23 H 0.14 4.05 7.94 -2.91 -0.02 4.03 16 24 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 25 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.08 1.66 8.09 -2.38 -0.02 1.64 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.35 6.47 8.80 -89.70 -0.79 5.68 16 30 H 0.35 5.07 9.04 -89.70 -0.81 4.26 16 Total: -1.00 -73.17 257.28 2.39 -70.79 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.43 Total: 23.32 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 2.27 Total: -48.79 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.27 Total: -76.21 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.22 Total: -14.82 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -73.17 2.39 -70.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232410731.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.579 kcal (2) G-P(sol) polarization free energy of solvation -73.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds