Wall clock time and date at job start Mon Mar 30 2020 03:42:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50706 * 109.46850 * 2 1
4 4 H 1.07997 * 119.99723 * 116.20459 * 3 2 1
5 5 C 1.37875 * 119.99846 * 296.19393 * 3 2 1
6 6 N 1.31512 * 119.99657 * 199.25131 * 5 3 2
7 7 Si 1.86796 * 120.00196 * 19.53275 * 5 3 2
8 8 H 1.48495 * 109.47520 * 84.38201 * 7 5 3
9 9 H 1.48502 * 109.47210 * 204.38669 * 7 5 3
10 10 H 1.48503 * 109.47054 * 324.38269 * 7 5 3
11 11 C 1.50703 * 109.47208 * 239.99995 * 2 1 3
12 12 N 1.34770 * 119.99753 * 168.91796 * 11 2 1
13 13 O 1.21277 * 119.99626 * 348.91996 * 11 2 1
14 14 C 1.50700 * 109.46944 * 119.99686 * 2 1 3
15 15 C 1.38230 * 119.99885 * 233.95194 * 14 2 1
16 16 C 1.38244 * 119.99858 * 179.76954 * 15 14 2
17 17 C 1.38242 * 119.99495 * 0.50659 * 16 15 14
18 18 C 1.38230 * 120.00223 * 359.75241 * 17 16 15
19 19 C 1.38237 * 119.99637 * 54.23224 * 14 2 1
20 20 H 1.09005 * 109.47204 * 60.00028 * 1 2 3
21 21 H 1.08999 * 109.47225 * 180.02562 * 1 2 3
22 22 H 1.08996 * 109.47338 * 300.00242 * 1 2 3
23 23 H 0.97008 * 119.99708 * 180.02562 * 6 5 3
24 24 H 0.96996 * 120.00428 * 0.02562 * 12 11 2
25 25 H 0.97008 * 119.99977 * 179.97438 * 12 11 2
26 26 H 1.07996 * 120.00511 * 0.02562 * 15 14 2
27 27 H 1.07993 * 119.99862 * 180.23339 * 16 15 14
28 28 H 1.08001 * 119.99324 * 179.72555 * 17 16 15
29 29 H 1.08001 * 119.99981 * 179.97438 * 18 17 16
30 30 H 1.08000 * 120.00212 * 0.02562 * 19 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 1 2.6016 1.7923 0.8392
5 6 1.7651 2.2465 -1.0714
6 7 2.4895 3.3268 -1.2657
7 14 0.3692 1.8348 -2.2425
8 1 -0.9087 2.3523 -1.6909
9 1 0.6291 2.4632 -3.5627
10 1 0.2776 0.3616 -2.4050
11 6 2.0323 -0.7104 -1.2305
12 7 3.3368 -0.6429 -1.5621
13 8 1.2627 -1.3428 -1.9222
14 6 2.0323 -0.7103 1.2305
15 6 2.9268 -0.0805 2.0754
16 6 3.3839 -0.7303 3.2067
17 6 2.9544 -2.0140 3.4874
18 6 2.0640 -2.6458 2.6397
19 6 1.6028 -1.9940 1.5112
20 1 -0.3634 0.5138 -0.8900
21 1 -0.3633 -1.0276 0.0005
22 1 -0.3634 0.5138 0.8899
23 1 2.3013 3.9079 -2.0194
24 1 3.9525 -0.1373 -1.0087
25 1 3.6603 -1.1004 -2.3540
26 1 3.2654 0.9208 1.8540
27 1 4.0798 -0.2368 3.8688
28 1 3.3149 -2.5233 4.3689
29 1 1.7288 -3.6488 2.8588
30 1 0.9078 -2.4880 0.8484
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238476155.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:56
Heat of formation + Delta-G solvation = 1.156551 kcal
Electronic energy + Delta-G solvation = -15094.106056 eV
Core-core repulsion = 12661.832915 eV
Total energy + Delta-G solvation = -2432.273141 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 219.100 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.59058 -37.87770 -34.27827 -32.46548 -31.92126 -30.38584 -28.88809 -25.38227
-23.39888 -21.89001 -21.20273 -18.99667 -17.26577 -16.32416 -16.12204 -15.40692
-15.20842 -14.09837 -13.81147 -13.48222 -13.23911 -13.06993 -12.66092 -12.14770
-12.07138 -11.51994 -11.20170 -10.77647 -10.57475 -10.37965 -10.27035 -9.77172
-9.13241 -8.81479 -8.53718 -8.35498 -8.29523 -7.99070 -6.32153 -4.32092
1.92284 1.98088 3.29793 3.42533 3.56310 3.78162 4.34497 4.36684
4.72846 5.01908 5.40118 5.45856 5.53177 5.78708 6.07537 6.14007
6.18973 6.36463 6.42957 6.64632 6.68017 6.76424 7.00108 7.06124
7.08386 7.25652 7.53969 7.60223 7.71299 8.21605 8.42036 8.70578
9.30923 9.35557 10.76179
Molecular weight = 219.10amu
Principal moments of inertia in cm(-1)
A = 0.035046 B = 0.012225 C = 0.010986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 798.763877 B = 2289.869595 C = 2548.142970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.059 3.941
3 C -0.539 4.539
4 H 0.096 0.904
5 C 0.094 3.906
6 N -0.872 5.872
7 Si 0.820 3.180
8 H -0.278 1.278
9 H -0.302 1.302
10 H -0.204 1.204
11 C 0.533 3.467
12 N -0.845 5.845
13 O -0.573 6.573
14 C -0.037 4.037
15 C -0.103 4.103
16 C -0.131 4.131
17 C -0.138 4.138
18 C -0.130 4.130
19 C -0.125 4.125
20 H 0.049 0.951
21 H 0.042 0.958
22 H 0.056 0.944
23 H 0.268 0.732
24 H 0.407 0.593
25 H 0.383 0.617
26 H 0.146 0.854
27 H 0.114 0.886
28 H 0.110 0.890
29 H 0.111 0.889
30 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.025 -7.553 5.621 9.630
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.055 3.945
3 C -0.575 4.575
4 H 0.114 0.886
5 C -0.112 4.112
6 N -0.506 5.506
7 Si 0.648 3.352
8 H -0.204 1.204
9 H -0.230 1.230
10 H -0.127 1.127
11 C 0.320 3.680
12 N -0.406 5.406
13 O -0.453 6.453
14 C -0.037 4.037
15 C -0.120 4.120
16 C -0.149 4.149
17 C -0.156 4.156
18 C -0.148 4.148
19 C -0.143 4.143
20 H 0.068 0.932
21 H 0.061 0.939
22 H 0.075 0.925
23 H 0.078 0.922
24 H 0.236 0.764
25 H 0.212 0.788
26 H 0.164 0.836
27 H 0.132 0.868
28 H 0.128 0.872
29 H 0.130 0.870
30 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges 1.443 -7.729 5.209 9.431
hybrid contribution -0.362 0.204 -0.783 0.887
sum 1.080 -7.524 4.426 8.796
Atomic orbital electron populations
1.22088 0.95509 1.00047 1.01091 1.17647 0.93643 0.95983 0.87178
1.20837 1.37478 0.92551 1.06620 0.88646 1.24888 0.95040 0.94803
0.96459 1.69947 1.36387 1.14759 1.29524 0.88060 0.83702 0.83434
0.80006 1.20436 1.23015 1.12698 1.21186 0.81634 0.77874 0.87322
1.43694 1.10455 1.55762 1.30687 1.90604 1.55766 1.43867 1.55083
1.19760 0.95276 0.92945 0.95759 1.21657 0.96043 1.01175 0.93161
1.21178 1.00665 0.95104 0.97914 1.20993 0.99259 0.95736 0.99620
1.20972 0.98802 0.99472 0.95545 1.21157 1.00480 0.95220 0.97423
0.93223 0.93861 0.92507 0.92242 0.76412 0.78835 0.83623 0.86791
0.87170 0.87046 0.86562
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.93 7.01 37.16 0.26 -2.67 16
2 C 0.06 1.33 0.49 -157.96 -0.08 1.25 16
3 C -0.54 -13.43 7.53 -34.44 -0.26 -13.69 16
4 H 0.10 2.44 5.27 -52.49 -0.28 2.17 16
5 C 0.09 2.53 5.27 -17.82 -0.09 2.43 16
6 N -0.87 -24.50 13.96 55.43 0.77 -23.72 16
7 Si 0.82 20.81 23.81 -169.99 -4.05 16.76 16
8 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
9 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16
10 H -0.20 -5.25 3.67 56.52 0.21 -5.04 16
11 C 0.53 12.15 4.58 -10.99 -0.05 12.10 16
12 N -0.85 -16.43 8.71 31.22 0.27 -16.16 16
13 O -0.57 -14.41 14.85 5.56 0.08 -14.33 16
14 C -0.04 -0.74 4.74 -104.62 -0.50 -1.23 16
15 C -0.10 -1.90 9.13 -39.58 -0.36 -2.27 16
16 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16
17 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16
18 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16
19 C -0.12 -2.27 8.93 -39.58 -0.35 -2.62 16
20 H 0.05 1.18 2.53 -51.93 -0.13 1.05 16
21 H 0.04 0.90 6.92 -51.93 -0.36 0.55 16
22 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
23 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16
24 H 0.41 7.56 8.33 -40.82 -0.34 7.22 16
25 H 0.38 6.48 8.93 -40.82 -0.36 6.12 16
26 H 0.15 2.83 5.33 -52.49 -0.28 2.55 16
27 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16
28 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16
29 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16
30 H 0.12 2.12 7.24 -52.49 -0.38 1.74 16
LS Contribution 242.20 15.07 3.65 3.65
Total: -1.00 -29.79 242.20 -5.05 -34.84
By element:
Atomic # 1 Polarization: 16.10 SS G_CDS: -3.15 Total: 12.95 kcal
Atomic # 6 Polarization: -11.36 SS G_CDS: -2.62 Total: -13.98 kcal
Atomic # 7 Polarization: -40.93 SS G_CDS: 1.05 Total: -39.89 kcal
Atomic # 8 Polarization: -14.41 SS G_CDS: 0.08 Total: -14.33 kcal
Atomic # 14 Polarization: 20.81 SS G_CDS: -4.05 Total: 16.76 kcal
Total LS contribution 3.65 Total: 3.65 kcal
Total: -29.79 -5.05 -34.84 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238476155.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.993 kcal
(2) G-P(sol) polarization free energy of solvation -29.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.202 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.837 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.157 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds