Wall clock time and date at job start Mon Mar 30 2020 03:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.46850 * 2 1 4 4 H 1.07997 * 119.99723 * 116.20459 * 3 2 1 5 5 C 1.37875 * 119.99846 * 296.19393 * 3 2 1 6 6 N 1.31512 * 119.99657 * 199.25131 * 5 3 2 7 7 Si 1.86796 * 120.00196 * 19.53275 * 5 3 2 8 8 H 1.48495 * 109.47520 * 84.38201 * 7 5 3 9 9 H 1.48502 * 109.47210 * 204.38669 * 7 5 3 10 10 H 1.48503 * 109.47054 * 324.38269 * 7 5 3 11 11 C 1.50703 * 109.47208 * 239.99995 * 2 1 3 12 12 N 1.34770 * 119.99753 * 168.91796 * 11 2 1 13 13 O 1.21277 * 119.99626 * 348.91996 * 11 2 1 14 14 C 1.50700 * 109.46944 * 119.99686 * 2 1 3 15 15 C 1.38230 * 119.99885 * 233.95194 * 14 2 1 16 16 C 1.38244 * 119.99858 * 179.76954 * 15 14 2 17 17 C 1.38242 * 119.99495 * 0.50659 * 16 15 14 18 18 C 1.38230 * 120.00223 * 359.75241 * 17 16 15 19 19 C 1.38237 * 119.99637 * 54.23224 * 14 2 1 20 20 H 1.09005 * 109.47204 * 60.00028 * 1 2 3 21 21 H 1.08999 * 109.47225 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47338 * 300.00242 * 1 2 3 23 23 H 0.97008 * 119.99708 * 180.02562 * 6 5 3 24 24 H 0.96996 * 120.00428 * 0.02562 * 12 11 2 25 25 H 0.97008 * 119.99977 * 179.97438 * 12 11 2 26 26 H 1.07996 * 120.00511 * 0.02562 * 15 14 2 27 27 H 1.07993 * 119.99862 * 180.23339 * 16 15 14 28 28 H 1.08001 * 119.99324 * 179.72555 * 17 16 15 29 29 H 1.08001 * 119.99981 * 179.97438 * 18 17 16 30 30 H 1.08000 * 120.00212 * 0.02562 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 1 2.6016 1.7923 0.8392 5 6 1.7651 2.2465 -1.0714 6 7 2.4895 3.3268 -1.2657 7 14 0.3692 1.8348 -2.2425 8 1 -0.9087 2.3523 -1.6909 9 1 0.6291 2.4632 -3.5627 10 1 0.2776 0.3616 -2.4050 11 6 2.0323 -0.7104 -1.2305 12 7 3.3368 -0.6429 -1.5621 13 8 1.2627 -1.3428 -1.9222 14 6 2.0323 -0.7103 1.2305 15 6 2.9268 -0.0805 2.0754 16 6 3.3839 -0.7303 3.2067 17 6 2.9544 -2.0140 3.4874 18 6 2.0640 -2.6458 2.6397 19 6 1.6028 -1.9940 1.5112 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 2.3013 3.9079 -2.0194 24 1 3.9525 -0.1373 -1.0087 25 1 3.6603 -1.1004 -2.3540 26 1 3.2654 0.9208 1.8540 27 1 4.0798 -0.2368 3.8688 28 1 3.3149 -2.5233 4.3689 29 1 1.7288 -3.6488 2.8588 30 1 0.9078 -2.4880 0.8484 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238476155.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:56 Heat of formation + Delta-G solvation = -20.307257 kcal Electronic energy + Delta-G solvation = -15095.036796 eV Core-core repulsion = 12661.832915 eV Total energy + Delta-G solvation = -2433.203881 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22249 -39.38406 -36.06094 -34.17582 -33.82607 -31.69786 -30.37377 -27.26820 -25.10979 -23.29669 -22.68606 -20.68124 -19.04998 -17.95449 -17.77301 -17.12412 -16.92088 -15.51054 -15.34383 -15.23086 -15.05584 -14.77467 -14.12067 -13.93119 -13.52261 -13.20020 -12.88811 -12.62433 -12.28929 -12.19450 -11.77714 -11.54318 -11.01649 -10.58501 -10.46885 -10.16266 -9.64739 -9.39099 -8.41343 -6.38057 0.61177 0.68142 1.24694 1.35736 1.53606 1.96618 2.30744 2.85720 3.04869 3.17089 4.05565 4.18643 4.32188 4.44804 4.46502 4.64558 4.68410 4.81190 4.88629 5.01872 5.27718 5.28843 5.33630 5.45849 5.73301 5.79701 5.95888 6.09717 6.22361 6.37583 6.65025 6.75054 7.25895 7.63818 8.69485 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035046 B = 0.012225 C = 0.010986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.763877 B = 2289.869595 C = 2548.142970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.517 4.517 4 H 0.088 0.912 5 C 0.062 3.938 6 N -0.906 5.906 7 Si 0.856 3.144 8 H -0.279 1.279 9 H -0.315 1.315 10 H -0.208 1.208 11 C 0.529 3.471 12 N -0.832 5.832 13 O -0.600 6.600 14 C -0.060 4.060 15 C -0.119 4.119 16 C -0.126 4.126 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.138 4.138 20 H 0.033 0.967 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.266 0.734 24 H 0.412 0.588 25 H 0.397 0.603 26 H 0.128 0.872 27 H 0.141 0.859 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 -9.284 7.462 12.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 C -0.554 4.554 4 H 0.105 0.895 5 C -0.141 4.141 6 N -0.543 5.543 7 Si 0.685 3.315 8 H -0.205 1.205 9 H -0.245 1.245 10 H -0.131 1.131 11 C 0.316 3.684 12 N -0.393 5.393 13 O -0.483 6.483 14 C -0.061 4.061 15 C -0.137 4.137 16 C -0.144 4.144 17 C -0.145 4.145 18 C -0.142 4.142 19 C -0.156 4.156 20 H 0.051 0.949 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.242 0.758 25 H 0.227 0.773 26 H 0.146 0.854 27 H 0.159 0.841 28 H 0.167 0.833 29 H 0.160 0.840 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.037 -9.470 7.053 11.982 hybrid contribution -0.488 0.660 -1.234 1.482 sum 1.549 -8.810 5.819 10.671 Atomic orbital electron populations 1.22071 0.95716 1.00589 1.00458 1.17615 0.93636 0.94722 0.88831 1.21059 1.35481 0.93523 1.05318 0.89471 1.25257 0.96077 0.95087 0.97635 1.70007 1.37863 1.15965 1.30445 0.87534 0.82716 0.82680 0.78549 1.20531 1.24462 1.13087 1.21235 0.82313 0.77795 0.87104 1.43561 1.09583 1.55105 1.31024 1.90585 1.56630 1.45335 1.55765 1.19580 0.97126 0.93986 0.95394 1.21543 0.96781 1.00762 0.94578 1.21474 1.00382 0.95598 0.96917 1.21439 0.97742 0.95080 1.00213 1.21331 0.98042 1.00619 0.94220 1.21175 1.01002 0.94741 0.98673 0.94885 0.92779 0.91869 0.92462 0.75827 0.77267 0.85443 0.84076 0.83279 0.83978 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 7.01 71.98 0.50 -5.34 16 2 C 0.06 2.48 0.49 -54.42 -0.03 2.45 16 3 C -0.52 -25.82 7.53 25.60 0.19 -25.62 16 4 H 0.09 4.50 5.27 -2.91 -0.02 4.48 16 5 C 0.06 3.34 5.27 84.65 0.45 3.78 16 6 N -0.91 -51.53 13.96 21.45 0.30 -51.23 16 7 Si 0.86 43.52 23.81 68.60 1.63 45.16 16 8 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 9 H -0.32 -16.55 7.11 99.48 0.71 -15.84 16 10 H -0.21 -10.69 3.67 99.48 0.37 -10.32 16 11 C 0.53 23.83 4.58 87.66 0.40 24.23 16 12 N -0.83 -31.70 8.71 -173.54 -1.51 -33.21 16 13 O -0.60 -29.96 14.85 -3.02 -0.04 -30.00 16 14 C -0.06 -2.33 4.74 -19.87 -0.09 -2.42 16 15 C -0.12 -4.22 9.13 22.27 0.20 -4.02 16 16 C -0.13 -3.52 10.05 22.27 0.22 -3.29 16 17 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 18 C -0.12 -3.38 10.05 22.27 0.22 -3.15 16 19 C -0.14 -4.72 8.93 22.27 0.20 -4.52 16 20 H 0.03 1.56 2.53 -2.38 -0.01 1.56 16 21 H 0.05 2.24 6.92 -2.39 -0.02 2.23 16 22 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 23 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 24 H 0.41 15.02 8.33 -92.71 -0.77 14.25 16 25 H 0.40 13.00 8.93 -92.70 -0.83 12.18 16 26 H 0.13 4.93 5.33 -2.91 -0.02 4.91 16 27 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 28 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.11 3.83 7.24 -2.91 -0.02 3.81 16 Total: -1.00 -63.12 242.20 2.12 -61.00 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.76 Total: 29.11 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 2.50 Total: -20.82 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -1.21 Total: -84.44 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.04 Total: -30.00 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.63 Total: 45.16 kcal Total: -63.12 2.12 -61.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238476155.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.691 kcal (2) G-P(sol) polarization free energy of solvation -63.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds