Wall clock time and date at job start Mon Mar 30 2020 03:42:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50706 * 109.46850 * 2 1
4 4 H 1.07997 * 119.99723 * 116.20459 * 3 2 1
5 5 C 1.37875 * 119.99846 * 296.19393 * 3 2 1
6 6 N 1.31512 * 119.99657 * 199.25131 * 5 3 2
7 7 Si 1.86796 * 120.00196 * 19.53275 * 5 3 2
8 8 H 1.48495 * 109.47520 * 84.38201 * 7 5 3
9 9 H 1.48502 * 109.47210 * 204.38669 * 7 5 3
10 10 H 1.48503 * 109.47054 * 324.38269 * 7 5 3
11 11 C 1.50703 * 109.47208 * 239.99995 * 2 1 3
12 12 N 1.34770 * 119.99753 * 168.91796 * 11 2 1
13 13 O 1.21277 * 119.99626 * 348.91996 * 11 2 1
14 14 C 1.50700 * 109.46944 * 119.99686 * 2 1 3
15 15 C 1.38230 * 119.99885 * 233.95194 * 14 2 1
16 16 C 1.38244 * 119.99858 * 179.76954 * 15 14 2
17 17 C 1.38242 * 119.99495 * 0.50659 * 16 15 14
18 18 C 1.38230 * 120.00223 * 359.75241 * 17 16 15
19 19 C 1.38237 * 119.99637 * 54.23224 * 14 2 1
20 20 H 1.09005 * 109.47204 * 60.00028 * 1 2 3
21 21 H 1.08999 * 109.47225 * 180.02562 * 1 2 3
22 22 H 1.08996 * 109.47338 * 300.00242 * 1 2 3
23 23 H 0.97008 * 119.99708 * 180.02562 * 6 5 3
24 24 H 0.96996 * 120.00428 * 0.02562 * 12 11 2
25 25 H 0.97008 * 119.99977 * 179.97438 * 12 11 2
26 26 H 1.07996 * 120.00511 * 0.02562 * 15 14 2
27 27 H 1.07993 * 119.99862 * 180.23339 * 16 15 14
28 28 H 1.08001 * 119.99324 * 179.72555 * 17 16 15
29 29 H 1.08001 * 119.99981 * 179.97438 * 18 17 16
30 30 H 1.08000 * 120.00212 * 0.02562 * 19 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 1 2.6016 1.7923 0.8392
5 6 1.7651 2.2465 -1.0714
6 7 2.4895 3.3268 -1.2657
7 14 0.3692 1.8348 -2.2425
8 1 -0.9087 2.3523 -1.6909
9 1 0.6291 2.4632 -3.5627
10 1 0.2776 0.3616 -2.4050
11 6 2.0323 -0.7104 -1.2305
12 7 3.3368 -0.6429 -1.5621
13 8 1.2627 -1.3428 -1.9222
14 6 2.0323 -0.7103 1.2305
15 6 2.9268 -0.0805 2.0754
16 6 3.3839 -0.7303 3.2067
17 6 2.9544 -2.0140 3.4874
18 6 2.0640 -2.6458 2.6397
19 6 1.6028 -1.9940 1.5112
20 1 -0.3634 0.5138 -0.8900
21 1 -0.3633 -1.0276 0.0005
22 1 -0.3634 0.5138 0.8899
23 1 2.3013 3.9079 -2.0194
24 1 3.9525 -0.1373 -1.0087
25 1 3.6603 -1.1004 -2.3540
26 1 3.2654 0.9208 1.8540
27 1 4.0798 -0.2368 3.8688
28 1 3.3149 -2.5233 4.3689
29 1 1.7288 -3.6488 2.8588
30 1 0.9078 -2.4880 0.8484
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238476155.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:56
Heat of formation + Delta-G solvation = -20.307257 kcal
Electronic energy + Delta-G solvation = -15095.036796 eV
Core-core repulsion = 12661.832915 eV
Total energy + Delta-G solvation = -2433.203881 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 219.100 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.22249 -39.38406 -36.06094 -34.17582 -33.82607 -31.69786 -30.37377 -27.26820
-25.10979 -23.29669 -22.68606 -20.68124 -19.04998 -17.95449 -17.77301 -17.12412
-16.92088 -15.51054 -15.34383 -15.23086 -15.05584 -14.77467 -14.12067 -13.93119
-13.52261 -13.20020 -12.88811 -12.62433 -12.28929 -12.19450 -11.77714 -11.54318
-11.01649 -10.58501 -10.46885 -10.16266 -9.64739 -9.39099 -8.41343 -6.38057
0.61177 0.68142 1.24694 1.35736 1.53606 1.96618 2.30744 2.85720
3.04869 3.17089 4.05565 4.18643 4.32188 4.44804 4.46502 4.64558
4.68410 4.81190 4.88629 5.01872 5.27718 5.28843 5.33630 5.45849
5.73301 5.79701 5.95888 6.09717 6.22361 6.37583 6.65025 6.75054
7.25895 7.63818 8.69485
Molecular weight = 219.10amu
Principal moments of inertia in cm(-1)
A = 0.035046 B = 0.012225 C = 0.010986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 798.763877 B = 2289.869595 C = 2548.142970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.056 3.944
3 C -0.517 4.517
4 H 0.088 0.912
5 C 0.062 3.938
6 N -0.906 5.906
7 Si 0.856 3.144
8 H -0.279 1.279
9 H -0.315 1.315
10 H -0.208 1.208
11 C 0.529 3.471
12 N -0.832 5.832
13 O -0.600 6.600
14 C -0.060 4.060
15 C -0.119 4.119
16 C -0.126 4.126
17 C -0.127 4.127
18 C -0.124 4.124
19 C -0.138 4.138
20 H 0.033 0.967
21 H 0.053 0.947
22 H 0.062 0.938
23 H 0.266 0.734
24 H 0.412 0.588
25 H 0.397 0.603
26 H 0.128 0.872
27 H 0.141 0.859
28 H 0.150 0.850
29 H 0.142 0.858
30 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.601 -9.284 7.462 12.192
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.052 3.948
3 C -0.554 4.554
4 H 0.105 0.895
5 C -0.141 4.141
6 N -0.543 5.543
7 Si 0.685 3.315
8 H -0.205 1.205
9 H -0.245 1.245
10 H -0.131 1.131
11 C 0.316 3.684
12 N -0.393 5.393
13 O -0.483 6.483
14 C -0.061 4.061
15 C -0.137 4.137
16 C -0.144 4.144
17 C -0.145 4.145
18 C -0.142 4.142
19 C -0.156 4.156
20 H 0.051 0.949
21 H 0.072 0.928
22 H 0.081 0.919
23 H 0.075 0.925
24 H 0.242 0.758
25 H 0.227 0.773
26 H 0.146 0.854
27 H 0.159 0.841
28 H 0.167 0.833
29 H 0.160 0.840
30 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 2.037 -9.470 7.053 11.982
hybrid contribution -0.488 0.660 -1.234 1.482
sum 1.549 -8.810 5.819 10.671
Atomic orbital electron populations
1.22071 0.95716 1.00589 1.00458 1.17615 0.93636 0.94722 0.88831
1.21059 1.35481 0.93523 1.05318 0.89471 1.25257 0.96077 0.95087
0.97635 1.70007 1.37863 1.15965 1.30445 0.87534 0.82716 0.82680
0.78549 1.20531 1.24462 1.13087 1.21235 0.82313 0.77795 0.87104
1.43561 1.09583 1.55105 1.31024 1.90585 1.56630 1.45335 1.55765
1.19580 0.97126 0.93986 0.95394 1.21543 0.96781 1.00762 0.94578
1.21474 1.00382 0.95598 0.96917 1.21439 0.97742 0.95080 1.00213
1.21331 0.98042 1.00619 0.94220 1.21175 1.01002 0.94741 0.98673
0.94885 0.92779 0.91869 0.92462 0.75827 0.77267 0.85443 0.84076
0.83279 0.83978 0.87318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.84 7.01 71.98 0.50 -5.34 16
2 C 0.06 2.48 0.49 -54.42 -0.03 2.45 16
3 C -0.52 -25.82 7.53 25.60 0.19 -25.62 16
4 H 0.09 4.50 5.27 -2.91 -0.02 4.48 16
5 C 0.06 3.34 5.27 84.65 0.45 3.78 16
6 N -0.91 -51.53 13.96 21.45 0.30 -51.23 16
7 Si 0.86 43.52 23.81 68.60 1.63 45.16 16
8 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16
9 H -0.32 -16.55 7.11 99.48 0.71 -15.84 16
10 H -0.21 -10.69 3.67 99.48 0.37 -10.32 16
11 C 0.53 23.83 4.58 87.66 0.40 24.23 16
12 N -0.83 -31.70 8.71 -173.54 -1.51 -33.21 16
13 O -0.60 -29.96 14.85 -3.02 -0.04 -30.00 16
14 C -0.06 -2.33 4.74 -19.87 -0.09 -2.42 16
15 C -0.12 -4.22 9.13 22.27 0.20 -4.02 16
16 C -0.13 -3.52 10.05 22.27 0.22 -3.29 16
17 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16
18 C -0.12 -3.38 10.05 22.27 0.22 -3.15 16
19 C -0.14 -4.72 8.93 22.27 0.20 -4.52 16
20 H 0.03 1.56 2.53 -2.38 -0.01 1.56 16
21 H 0.05 2.24 6.92 -2.39 -0.02 2.23 16
22 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16
23 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16
24 H 0.41 15.02 8.33 -92.71 -0.77 14.25 16
25 H 0.40 13.00 8.93 -92.70 -0.83 12.18 16
26 H 0.13 4.93 5.33 -2.91 -0.02 4.91 16
27 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16
28 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16
29 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16
30 H 0.11 3.83 7.24 -2.91 -0.02 3.81 16
Total: -1.00 -63.12 242.20 2.12 -61.00
By element:
Atomic # 1 Polarization: 29.87 SS G_CDS: -0.76 Total: 29.11 kcal
Atomic # 6 Polarization: -23.32 SS G_CDS: 2.50 Total: -20.82 kcal
Atomic # 7 Polarization: -83.23 SS G_CDS: -1.21 Total: -84.44 kcal
Atomic # 8 Polarization: -29.96 SS G_CDS: -0.04 Total: -30.00 kcal
Atomic # 14 Polarization: 43.52 SS G_CDS: 1.63 Total: 45.16 kcal
Total: -63.12 2.12 -61.00 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238476155.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.691 kcal
(2) G-P(sol) polarization free energy of solvation -63.116 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.425 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.998 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.307 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds