Wall clock time and date at job start Mon Mar 30 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86799 * 119.99666 * 2 1 4 4 H 1.48499 * 109.46842 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47013 * 299.99167 * 3 2 1 6 6 H 1.48490 * 109.47515 * 59.99548 * 3 2 1 7 7 C 1.39884 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99832 * 167.45144 * 7 2 1 9 9 C 1.41217 * 120.00454 * 347.44185 * 7 2 1 10 10 C 1.40850 * 120.17574 * 333.52756 * 9 7 2 11 11 C 1.36424 * 119.80746 * 180.23074 * 10 9 7 12 12 C 1.39328 * 120.18298 * 359.46845 * 11 10 9 13 13 O 1.35679 * 119.81522 * 180.28381 * 12 11 10 14 14 C 1.39288 * 120.36841 * 0.55147 * 12 11 10 15 15 C 1.50706 * 119.91037 * 179.72759 * 14 12 11 16 16 N 1.46900 * 115.54964 * 268.52457 * 15 14 12 17 17 C 1.52998 * 117.49776 * 122.81538 * 15 14 12 18 18 C 1.52996 * 117.49756 * 54.19228 * 15 14 12 19 19 C 1.36457 * 120.18150 * 359.70821 * 14 12 11 20 20 H 0.97001 * 120.00091 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.09763 * 359.94322 * 10 9 7 22 22 H 1.08006 * 119.90351 * 179.74322 * 11 10 9 23 23 H 0.96704 * 113.99961 * 270.26857 * 13 12 11 24 24 H 1.00899 * 111.00342 * 325.58420 * 16 15 14 25 25 H 1.00904 * 110.99525 * 89.53389 * 16 15 14 26 26 H 1.09001 * 117.49601 * 0.02562 * 17 15 14 27 27 H 1.08998 * 117.49644 * 145.01809 * 17 15 14 28 28 H 1.08999 * 117.50132 * 214.97583 * 18 15 14 29 29 H 1.08996 * 117.49901 * 0.02562 * 18 15 14 30 30 H 1.08002 * 120.08971 * 180.02562 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8841 2.3964 -1.2127 6 1 1.8840 2.3965 1.2123 7 6 2.0083 -1.2114 0.0005 8 1 3.0690 -1.2227 -0.2027 9 6 1.3276 -2.4197 0.2670 10 6 0.1559 -2.4147 1.0486 11 6 -0.4931 -3.5870 1.3053 12 6 -0.0060 -4.7852 0.7874 13 8 -0.6606 -5.9459 1.0426 14 6 1.1522 -4.7989 0.0138 15 6 1.6733 -6.1017 -0.5360 16 7 2.6467 -6.8031 0.3117 17 6 1.8498 -6.2084 -2.0520 18 6 0.7087 -6.9568 -1.3601 19 6 1.8162 -3.6358 -0.2478 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2252 -1.4862 1.4475 22 1 -1.3894 -3.5855 1.9079 23 1 -0.3647 -6.3960 1.8457 24 1 3.2318 -6.1481 0.8084 25 1 2.1830 -7.4308 0.9512 26 1 1.5895 -5.3362 -2.6516 27 1 2.6885 -6.7990 -2.4207 28 1 0.7967 -8.0398 -1.2737 29 1 -0.3026 -6.5769 -1.5050 30 1 2.7139 -3.6481 -0.8481 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238559924.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:51 Heat of formation + Delta-G solvation = -6.048080 kcal Electronic energy + Delta-G solvation = -14490.474410 eV Core-core repulsion = 12057.888853 eV Total energy + Delta-G solvation = -2432.585557 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.95571 -36.52162 -35.75039 -33.21253 -30.61882 -29.55841 -28.93916 -24.92269 -22.11541 -21.98292 -20.63238 -19.20921 -17.22838 -17.11015 -15.47844 -15.10752 -15.01017 -14.41526 -14.00726 -13.76625 -13.23376 -12.66344 -12.07805 -11.74507 -11.53929 -11.24872 -10.99843 -10.93035 -10.81848 -10.51926 -10.14708 -9.92698 -9.38312 -9.30866 -9.18893 -8.24513 -7.62163 -7.27386 -6.82061 -4.43903 2.56756 2.85005 3.02693 3.06420 3.08118 3.86617 4.35145 4.46077 4.81067 5.26442 5.45506 5.53537 5.61497 6.03556 6.13968 6.20005 6.25480 6.44226 6.73428 6.83672 6.95737 7.04102 7.18152 7.43841 7.50658 7.58613 7.74371 7.91825 7.93956 8.12536 8.44682 8.64532 8.78017 8.95288 10.11213 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.040778 B = 0.008308 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.477947 B = 3369.490830 C = 3748.824775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.455 4.455 8 H 0.079 0.921 9 C 0.104 3.896 10 C -0.150 4.150 11 C -0.121 4.121 12 C -0.028 4.028 13 O -0.496 6.496 14 C -0.073 4.073 15 C 0.094 3.906 16 N -0.809 5.809 17 C -0.164 4.164 18 C -0.155 4.155 19 C -0.196 4.196 20 H 0.281 0.719 21 H 0.125 0.875 22 H 0.094 0.906 23 H 0.349 0.651 24 H 0.345 0.655 25 H 0.335 0.665 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.894 -5.311 1.439 5.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.485 4.485 8 H 0.097 0.903 9 C 0.102 3.898 10 C -0.169 4.169 11 C -0.140 4.140 12 C -0.074 4.074 13 O -0.302 6.302 14 C -0.076 4.076 15 C 0.001 3.999 16 N -0.336 5.336 17 C -0.202 4.202 18 C -0.193 4.193 19 C -0.216 4.216 20 H 0.092 0.908 21 H 0.143 0.857 22 H 0.112 0.888 23 H 0.199 0.801 24 H 0.158 0.842 25 H 0.148 0.852 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.684 -5.319 0.207 5.583 hybrid contribution 0.019 1.219 1.208 1.717 sum 1.703 -4.099 1.415 4.659 Atomic orbital electron populations 1.69826 1.07511 1.29175 1.35633 1.25946 0.94849 1.01464 0.92294 0.86195 0.80844 0.80713 0.78615 1.18368 1.19895 1.19691 1.19603 0.96520 0.90618 1.41740 0.90278 1.17675 0.91618 0.92101 0.88453 1.21114 0.98239 0.96634 1.00938 1.20775 0.99321 0.93072 1.00867 1.17863 0.96409 0.84613 1.08474 1.84849 1.62872 1.36161 1.46349 1.19089 0.94896 0.93088 1.00507 1.19705 0.96193 0.92993 0.91005 1.58738 1.23060 1.22976 1.28860 1.23094 1.00191 1.02440 0.94496 1.22935 0.95429 0.97363 1.03538 1.20518 1.02560 0.92167 1.06391 0.90818 0.85721 0.88805 0.80081 0.84223 0.85225 0.89007 0.89082 0.89507 0.88674 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.25 10.78 55.54 0.60 -19.66 16 2 C 0.07 1.77 5.23 -17.34 -0.09 1.67 16 3 Si 0.91 18.32 29.58 -169.99 -5.03 13.29 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -11.78 9.05 -37.84 -0.34 -12.13 16 8 H 0.08 1.97 7.88 -52.48 -0.41 1.56 16 9 C 0.10 2.71 5.57 -106.81 -0.60 2.11 16 10 C -0.15 -3.83 8.62 -39.25 -0.34 -4.17 16 11 C -0.12 -2.86 9.92 -39.83 -0.40 -3.26 16 12 C -0.03 -0.63 6.62 -38.79 -0.26 -0.89 16 13 O -0.50 -9.67 12.03 -18.74 -0.23 -9.90 16 14 C -0.07 -1.61 5.07 -104.87 -0.53 -2.14 16 15 C 0.09 1.73 2.38 -132.75 -0.32 1.42 16 16 N -0.81 -12.83 9.75 -0.19 0.00 -12.83 16 17 C -0.16 -2.89 10.01 -26.73 -0.27 -3.16 16 18 C -0.15 -2.68 9.22 -26.73 -0.25 -2.93 16 19 C -0.20 -4.70 9.26 -39.25 -0.36 -5.07 16 20 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 21 H 0.13 3.29 6.10 -52.48 -0.32 2.97 16 22 H 0.09 2.04 8.06 -52.48 -0.42 1.62 16 23 H 0.35 5.30 9.06 45.56 0.41 5.72 16 24 H 0.35 5.45 8.90 -39.29 -0.35 5.10 16 25 H 0.34 4.68 9.08 -39.29 -0.36 4.32 16 26 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 27 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.09 1.79 8.01 -51.93 -0.42 1.38 16 30 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 262.29 15.07 3.95 3.95 Total: -1.00 -27.40 262.29 -7.14 -34.54 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -2.69 Total: 19.13 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -3.74 Total: -28.53 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.60 Total: -32.49 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.23 Total: -9.90 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.40 -7.14 -34.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238559924.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.492 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds