Wall clock time and date at job start Mon Mar 30 2020 02:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86795 * 120.00017 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99769 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99838 * 3 2 1 6 6 H 1.48491 * 109.47227 * 150.00026 * 3 2 1 7 7 C 1.40459 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.41028 * 120.00233 * 0.02562 * 7 2 1 10 10 O 1.21433 * 119.99896 * 359.97438 * 9 7 2 11 11 C 1.50702 * 119.99880 * 180.27760 * 9 7 2 12 12 H 1.09011 * 109.46950 * 319.72303 * 11 9 7 13 13 N 1.46894 * 109.46990 * 199.72715 * 11 9 7 14 14 C 1.52992 * 109.47246 * 79.72231 * 11 9 7 15 15 C 1.50704 * 109.47207 * 184.99909 * 14 11 9 16 16 C 1.38230 * 119.99881 * 269.72955 * 15 14 11 17 17 C 1.38237 * 119.99653 * 179.76801 * 16 15 14 18 18 C 1.38238 * 120.00260 * 0.50335 * 17 16 15 19 19 C 1.38234 * 119.99830 * 359.74848 * 18 17 16 20 20 C 1.38238 * 119.99755 * 90.00120 * 15 14 11 21 21 H 0.96999 * 119.99951 * 0.02562 * 1 2 3 22 22 H 1.00907 * 111.00004 * 176.04700 * 13 11 9 23 23 H 1.00907 * 111.00188 * 299.99503 * 13 11 9 24 24 H 1.09000 * 109.47366 * 305.00198 * 14 11 9 25 25 H 1.09004 * 109.47463 * 65.00136 * 14 11 9 26 26 H 1.08003 * 120.00551 * 359.97438 * 16 15 14 27 27 H 1.08002 * 119.99767 * 180.23071 * 17 16 15 28 28 H 1.07993 * 120.00298 * 179.72805 * 18 17 16 29 29 H 1.07996 * 120.00303 * 179.97438 * 19 18 17 30 30 H 1.07994 * 119.99994 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.4868 2.0463 -1.4001 5 1 1.4367 2.6526 0.7000 6 1 3.5367 1.4402 0.7000 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3023 -2.4378 0.0005 10 8 0.0880 -2.4377 0.0005 11 6 2.0558 -3.7429 0.0075 12 1 2.9196 -3.6672 -0.6532 13 7 1.1738 -4.8200 -0.4612 14 6 2.5272 -4.0521 1.4297 15 6 3.3841 -5.2918 1.4166 16 6 2.8045 -6.5344 1.5921 17 6 3.5899 -7.6719 1.5752 18 6 4.9561 -7.5659 1.3933 19 6 5.5363 -6.3229 1.2231 20 6 4.7503 -5.1857 1.2347 21 1 -0.4850 0.8400 -0.0004 22 1 1.6738 -5.6940 -0.5271 23 1 0.3649 -4.9103 0.1352 24 1 3.1087 -3.2125 1.8104 25 1 1.6617 -4.2155 2.0720 26 1 1.7377 -6.6169 1.7390 27 1 3.1366 -8.6431 1.7086 28 1 5.5702 -8.4542 1.3846 29 1 6.6037 -6.2400 1.0814 30 1 5.2036 -4.2145 1.1024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238597245.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:16 Heat of formation + Delta-G solvation = -28.532920 kcal Electronic energy + Delta-G solvation = -14186.441833 eV Core-core repulsion = 11752.881260 eV Total energy + Delta-G solvation = -2433.560573 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.24805 -37.11729 -34.26522 -32.54235 -30.97013 -30.66897 -27.96670 -26.30785 -23.25709 -22.35226 -20.75685 -18.96446 -16.78912 -16.41732 -15.49191 -14.99425 -14.90817 -14.41751 -13.63844 -13.43676 -13.24798 -12.94449 -12.78359 -12.14072 -11.91448 -11.48415 -11.26564 -11.03570 -10.84849 -10.75676 -10.42471 -10.29169 -10.04312 -8.89687 -8.79121 -8.59032 -7.89896 -7.23127 -6.17608 -4.85928 1.52716 1.54095 3.06836 3.15395 3.18354 3.93335 4.05179 4.28032 5.02195 5.03842 5.13319 5.26240 5.39539 5.56093 5.68626 5.71729 5.93444 6.04890 6.21806 6.24851 6.38290 6.59444 6.62686 6.70537 6.77930 6.98493 7.18198 7.28884 7.96177 8.10717 8.30108 8.87236 8.94950 10.39530 10.63473 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.044299 B = 0.007033 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.917004 B = 3980.349920 C = 4466.068046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.084 3.916 3 Si 0.903 3.097 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.375 3.625 10 O -0.534 6.534 11 C 0.059 3.941 12 H 0.076 0.924 13 N -0.829 5.829 14 C -0.107 4.107 15 C -0.067 4.067 16 C -0.125 4.125 17 C -0.119 4.119 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.118 4.118 21 H 0.272 0.728 22 H 0.322 0.678 23 H 0.340 0.660 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.043 -9.330 3.686 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.268 3.732 10 O -0.421 6.421 11 C -0.054 4.054 12 H 0.094 0.906 13 N -0.358 5.358 14 C -0.146 4.146 15 C -0.067 4.067 16 C -0.143 4.143 17 C -0.137 4.137 18 C -0.154 4.154 19 C -0.137 4.137 20 C -0.136 4.136 21 H 0.083 0.917 22 H 0.133 0.867 23 H 0.153 0.847 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.181 -8.839 3.013 12.415 hybrid contribution 0.943 0.284 0.933 1.357 sum 9.124 -8.555 3.946 13.115 Atomic orbital electron populations 1.69956 1.07464 1.27823 1.31752 1.25984 0.94554 1.00812 0.92564 0.86435 0.80437 0.81243 0.79146 1.19459 1.20283 1.18655 1.20755 0.94768 0.91889 1.49385 0.91409 1.19342 0.88937 0.86714 0.78193 1.90387 1.15471 1.88307 1.47906 1.22053 0.96354 0.95512 0.91472 0.90598 1.58675 1.10731 1.07732 1.58633 1.21367 0.98634 0.94404 1.00208 1.20197 0.94261 0.95406 0.96806 1.21098 0.99716 0.92188 1.01290 1.21090 0.94002 0.98195 1.00398 1.21048 0.95047 0.97341 1.01957 1.21116 0.99569 0.92705 1.00307 1.21135 0.93427 0.98755 1.00265 0.91697 0.86682 0.84650 0.89965 0.91452 0.86423 0.86470 0.86616 0.86421 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.62 11.72 55.57 0.65 -20.97 16 2 C 0.08 2.28 5.50 -17.27 -0.10 2.18 16 3 Si 0.90 19.54 29.56 -169.99 -5.03 14.52 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.54 -14.80 9.22 -37.69 -0.35 -15.14 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.38 10.44 6.15 -33.25 -0.20 10.24 16 10 O -0.53 -16.87 14.77 5.42 0.08 -16.79 16 11 C 0.06 1.30 3.07 -68.87 -0.21 1.09 16 12 H 0.08 1.66 8.14 -51.92 -0.42 1.24 16 13 N -0.83 -17.11 8.87 -5.66 -0.05 -17.16 16 14 C -0.11 -2.00 4.98 -27.88 -0.14 -2.14 16 15 C -0.07 -1.06 4.72 -104.62 -0.49 -1.55 16 16 C -0.12 -1.78 8.41 -39.58 -0.33 -2.12 16 17 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 18 C -0.14 -1.62 10.05 -39.58 -0.40 -2.02 16 19 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 20 C -0.12 -1.72 9.70 -39.58 -0.38 -2.11 16 21 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 22 H 0.32 5.70 7.34 -39.29 -0.29 5.42 16 23 H 0.34 7.08 8.58 -39.29 -0.34 6.74 16 24 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 25 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 26 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 264.80 15.07 3.99 3.99 Total: -1.00 -32.12 264.80 -7.30 -39.43 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -3.55 Total: 12.32 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.40 Total: -15.34 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.60 Total: -38.13 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.08 Total: -16.79 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.12 -7.30 -39.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238597245.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.893 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds