Wall clock time and date at job start Mon Mar 30 2020 02:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30524 * 1 3 3 Si 1.86795 * 120.00017 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99769 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99838 * 3 2 1 6 6 H 1.48491 * 109.47227 * 150.00026 * 3 2 1 7 7 C 1.40459 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.41028 * 120.00233 * 0.02562 * 7 2 1 10 10 O 1.21433 * 119.99896 * 359.97438 * 9 7 2 11 11 C 1.50702 * 119.99880 * 180.27760 * 9 7 2 12 12 H 1.09011 * 109.46950 * 319.72303 * 11 9 7 13 13 N 1.46894 * 109.46990 * 199.72715 * 11 9 7 14 14 C 1.52992 * 109.47246 * 79.72231 * 11 9 7 15 15 C 1.50704 * 109.47207 * 184.99909 * 14 11 9 16 16 C 1.38230 * 119.99881 * 269.72955 * 15 14 11 17 17 C 1.38237 * 119.99653 * 179.76801 * 16 15 14 18 18 C 1.38238 * 120.00260 * 0.50335 * 17 16 15 19 19 C 1.38234 * 119.99830 * 359.74848 * 18 17 16 20 20 C 1.38238 * 119.99755 * 90.00120 * 15 14 11 21 21 H 0.96999 * 119.99951 * 0.02562 * 1 2 3 22 22 H 1.00907 * 111.00004 * 176.04700 * 13 11 9 23 23 H 1.00907 * 111.00188 * 299.99503 * 13 11 9 24 24 H 1.09000 * 109.47366 * 305.00198 * 14 11 9 25 25 H 1.09004 * 109.47463 * 65.00136 * 14 11 9 26 26 H 1.08003 * 120.00551 * 359.97438 * 16 15 14 27 27 H 1.08002 * 119.99767 * 180.23071 * 17 16 15 28 28 H 1.07993 * 120.00298 * 179.72805 * 18 17 16 29 29 H 1.07996 * 120.00303 * 179.97438 * 19 18 17 30 30 H 1.07994 * 119.99994 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.4868 2.0463 -1.4001 5 1 1.4367 2.6526 0.7000 6 1 3.5367 1.4402 0.7000 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3023 -2.4378 0.0005 10 8 0.0880 -2.4377 0.0005 11 6 2.0558 -3.7429 0.0075 12 1 2.9196 -3.6672 -0.6532 13 7 1.1738 -4.8200 -0.4612 14 6 2.5272 -4.0521 1.4297 15 6 3.3841 -5.2918 1.4166 16 6 2.8045 -6.5344 1.5921 17 6 3.5899 -7.6719 1.5752 18 6 4.9561 -7.5659 1.3933 19 6 5.5363 -6.3229 1.2231 20 6 4.7503 -5.1857 1.2347 21 1 -0.4850 0.8400 -0.0004 22 1 1.6738 -5.6940 -0.5271 23 1 0.3649 -4.9103 0.1352 24 1 3.1087 -3.2125 1.8104 25 1 1.6617 -4.2155 2.0720 26 1 1.7377 -6.6169 1.7390 27 1 3.1366 -8.6431 1.7086 28 1 5.5702 -8.4542 1.3846 29 1 6.6037 -6.2400 1.0814 30 1 5.2036 -4.2145 1.1024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238597245.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:15 Heat of formation + Delta-G solvation = -50.294438 kcal Electronic energy + Delta-G solvation = -14187.385483 eV Core-core repulsion = 11752.881260 eV Total energy + Delta-G solvation = -2434.504223 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44427 -39.02629 -35.97751 -34.64876 -32.28264 -31.73501 -29.85042 -28.00427 -24.93569 -23.39222 -22.02844 -20.88563 -18.65108 -17.71343 -17.34080 -16.32608 -16.17136 -15.93092 -15.30687 -15.07460 -14.77124 -14.27280 -14.16209 -13.57730 -13.51355 -13.23078 -13.05468 -12.68236 -12.47816 -12.15453 -12.03041 -11.84038 -11.78556 -10.96185 -9.86582 -9.75977 -9.64449 -9.19186 -8.24270 -7.06746 0.46155 0.51576 1.35577 1.37664 1.53941 2.21294 2.21780 2.89657 3.37936 3.83140 3.87947 4.01201 4.19325 4.30729 4.32978 4.51028 4.53190 4.66659 4.75173 4.99915 5.04058 5.18617 5.20099 5.23753 5.60118 5.63559 5.77338 5.98413 6.15078 6.26227 6.68776 6.76932 6.88502 8.31738 8.54772 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.044299 B = 0.007033 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.917004 B = 3980.349920 C = 4466.068046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.027 3.973 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.247 1.247 7 C -0.563 4.563 8 H 0.084 0.916 9 C 0.351 3.649 10 O -0.584 6.584 11 C 0.071 3.929 12 H 0.077 0.923 13 N -0.833 5.833 14 C -0.091 4.091 15 C -0.088 4.088 16 C -0.134 4.134 17 C -0.119 4.119 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.132 4.132 21 H 0.280 0.720 22 H 0.340 0.660 23 H 0.337 0.663 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.523 -10.112 3.868 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.192 4.192 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.170 1.170 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.248 3.752 10 O -0.476 6.476 11 C -0.042 4.042 12 H 0.095 0.905 13 N -0.364 5.364 14 C -0.131 4.131 15 C -0.088 4.088 16 C -0.153 4.153 17 C -0.136 4.136 18 C -0.147 4.147 19 C -0.137 4.137 20 C -0.150 4.150 21 H 0.090 0.910 22 H 0.153 0.847 23 H 0.150 0.850 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.135 0.865 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.693 -9.652 3.195 14.756 hybrid contribution 0.191 0.429 0.876 0.994 sum 10.884 -9.223 4.071 14.836 Atomic orbital electron populations 1.70096 1.09834 1.29604 1.32510 1.27213 0.95432 1.05407 0.91117 0.85120 0.79117 0.75106 0.79696 1.18466 1.19331 1.17045 1.21287 0.95818 0.92849 1.49512 0.89765 1.20137 0.88719 0.89376 0.77012 1.90341 1.17460 1.89593 1.50191 1.21655 0.95478 0.93316 0.93723 0.90535 1.58596 1.10734 1.08401 1.58640 1.21068 0.98523 0.95984 0.97501 1.19936 0.94582 0.94496 0.99826 1.21189 1.00117 0.92338 1.01610 1.21426 0.94368 0.98585 0.99268 1.21496 0.95136 0.98270 0.99770 1.21444 1.00812 0.92207 0.99221 1.21263 0.93082 0.99856 1.00802 0.90966 0.84658 0.84951 0.90962 0.92799 0.86478 0.83772 0.83303 0.83745 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.49 11.72 21.91 0.26 -47.23 16 2 C 0.03 1.49 5.50 85.43 0.47 1.96 16 3 Si 0.99 39.98 29.56 68.60 2.03 42.01 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 6 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 7 C -0.56 -31.75 9.22 23.50 0.22 -31.54 16 8 H 0.08 4.30 7.85 -2.91 -0.02 4.27 16 9 C 0.35 20.26 6.15 26.37 0.16 20.43 16 10 O -0.58 -38.69 14.77 -3.51 -0.05 -38.74 16 11 C 0.07 3.22 3.07 44.17 0.14 3.36 16 12 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 13 N -0.83 -35.04 8.87 -171.81 -1.52 -36.57 16 14 C -0.09 -3.51 4.98 29.85 0.15 -3.37 16 15 C -0.09 -2.77 4.72 -19.86 -0.09 -2.86 16 16 C -0.13 -3.67 8.41 22.27 0.19 -3.48 16 17 C -0.12 -2.59 10.05 22.27 0.22 -2.36 16 18 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 19 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 20 C -0.13 -3.68 9.70 22.27 0.22 -3.46 16 21 H 0.28 15.06 8.29 -92.71 -0.77 14.30 16 22 H 0.34 11.98 7.34 -89.69 -0.66 11.32 16 23 H 0.34 14.55 8.58 -89.69 -0.77 13.78 16 24 H 0.07 2.85 8.09 -2.39 -0.02 2.83 16 25 H 0.05 2.17 8.08 -2.38 -0.02 2.15 16 26 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 29 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -71.69 264.80 2.55 -69.14 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -0.27 Total: 37.46 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 2.11 Total: -26.07 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.27 Total: -83.80 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.05 Total: -38.74 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -71.69 2.55 -69.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238597245.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.850 kcal (2) G-P(sol) polarization free energy of solvation -71.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds