Wall clock time and date at job start Mon Mar 30 2020 02:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30526 * 1 3 3 Si 1.86804 * 119.99963 * 2 1 4 4 H 1.48496 * 109.46789 * 240.00095 * 3 2 1 5 5 H 1.48504 * 109.47051 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47132 * 119.99858 * 3 2 1 7 7 C 1.40457 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.41027 * 120.00264 * 0.02562 * 7 2 1 10 10 O 1.21437 * 119.99967 * 359.97438 * 9 7 2 11 11 C 1.50694 * 120.00295 * 180.02562 * 9 7 2 12 12 H 1.09007 * 109.47204 * 44.99936 * 11 9 7 13 13 N 1.46897 * 109.47206 * 164.99765 * 11 9 7 14 14 C 1.52995 * 109.47090 * 284.99969 * 11 9 7 15 15 C 1.50707 * 109.47301 * 174.99821 * 14 11 9 16 16 C 1.38238 * 119.99792 * 90.00016 * 15 14 11 17 17 C 1.38235 * 119.99712 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00220 * 359.97124 * 17 16 15 19 19 C 1.38233 * 120.00037 * 0.28719 * 18 17 16 20 20 C 1.38234 * 120.00179 * 269.97953 * 15 14 11 21 21 H 0.96996 * 120.00141 * 359.97438 * 1 2 3 22 22 H 1.00900 * 111.00180 * 60.00604 * 13 11 9 23 23 H 1.00904 * 111.00312 * 183.95316 * 13 11 9 24 24 H 1.09005 * 109.47610 * 55.00124 * 14 11 9 25 25 H 1.09000 * 109.47256 * 294.99466 * 14 11 9 26 26 H 1.08005 * 120.00068 * 359.97438 * 16 15 14 27 27 H 1.07999 * 119.99770 * 179.97438 * 17 16 15 28 28 H 1.08002 * 119.99744 * 180.02562 * 18 17 16 29 29 H 1.07998 * 120.00395 * 179.72811 * 19 18 17 30 30 H 1.07999 * 119.99968 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.0929 1.6964 -1.2125 5 1 1.2742 2.7465 -0.0006 6 1 3.0930 1.6965 1.2125 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2164 0.0001 9 6 1.3025 -2.4378 0.0005 10 8 0.0881 -2.4378 0.0005 11 6 2.0559 -3.7428 0.0017 12 1 2.8664 -3.6938 0.7290 13 7 1.1420 -4.8356 0.3600 14 6 2.6353 -3.9984 -1.3910 15 6 3.4903 -5.2391 -1.3595 16 6 2.9264 -6.4739 -1.6206 17 6 3.7108 -7.6118 -1.5923 18 6 5.0591 -7.5149 -1.3034 19 6 5.6219 -6.2807 -1.0371 20 6 4.8385 -5.1422 -1.0700 21 1 -0.4850 0.8400 0.0004 22 1 0.3814 -4.9018 -0.2997 23 1 1.6366 -5.7122 0.4307 24 1 3.2433 -3.1458 -1.6938 25 1 1.8218 -4.1359 -2.1034 26 1 1.8730 -6.5496 -1.8467 27 1 3.2701 -8.5766 -1.7958 28 1 5.6719 -8.4039 -1.2817 29 1 6.6745 -6.2054 -0.8071 30 1 5.2793 -4.1774 -0.8668 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238613229.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:18 Heat of formation + Delta-G solvation = -49.897575 kcal Electronic energy + Delta-G solvation = -14191.551498 eV Core-core repulsion = 11757.064485 eV Total energy + Delta-G solvation = -2434.487014 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.44139 -39.01995 -35.97669 -34.64859 -32.27547 -31.73172 -29.86990 -27.96665 -24.93436 -23.39011 -22.01500 -20.90597 -18.62547 -17.72073 -17.33538 -16.32577 -16.17278 -15.92781 -15.30203 -15.08078 -14.73586 -14.27142 -14.17456 -13.56668 -13.50540 -13.23859 -13.03576 -12.68858 -12.46472 -12.13554 -12.07043 -11.83983 -11.78006 -10.94580 -9.85989 -9.75380 -9.63507 -9.18737 -8.23765 -7.06240 0.46423 0.51775 1.37441 1.37814 1.52325 2.21651 2.22162 2.89873 3.38888 3.83560 3.87533 4.00871 4.19455 4.30902 4.33238 4.50998 4.53965 4.66898 4.75541 5.01026 5.04725 5.18889 5.20436 5.24166 5.60302 5.63739 5.77622 5.98430 6.15297 6.26154 6.69324 6.77272 6.89291 8.32389 8.55304 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.043843 B = 0.007073 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.495543 B = 3957.935628 C = 4452.185734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.027 3.973 3 Si 0.990 3.010 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.563 4.563 8 H 0.085 0.915 9 C 0.350 3.650 10 O -0.583 6.583 11 C 0.071 3.929 12 H 0.076 0.924 13 N -0.833 5.833 14 C -0.091 4.091 15 C -0.088 4.088 16 C -0.135 4.135 17 C -0.119 4.119 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.132 4.132 21 H 0.280 0.720 22 H 0.337 0.663 23 H 0.339 0.661 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.117 0.883 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.801 -9.945 -3.721 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.191 4.191 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.247 3.753 10 O -0.475 6.475 11 C -0.042 4.042 12 H 0.095 0.905 13 N -0.363 5.363 14 C -0.130 4.130 15 C -0.089 4.089 16 C -0.153 4.153 17 C -0.137 4.137 18 C -0.147 4.147 19 C -0.137 4.137 20 C -0.150 4.150 21 H 0.090 0.910 22 H 0.150 0.850 23 H 0.153 0.847 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.135 0.865 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.914 -9.510 -3.035 14.790 hybrid contribution 0.275 0.454 -0.884 1.031 sum 11.188 -9.056 -3.919 14.918 Atomic orbital electron populations 1.70091 1.09830 1.29657 1.32493 1.27209 0.95423 1.05389 0.91127 0.85178 0.78572 0.74805 0.80525 1.17563 1.19494 1.17775 1.21254 0.95823 0.92822 1.49591 0.89724 1.20147 0.88737 0.89365 0.77091 1.90346 1.17448 1.89574 1.50113 1.21650 0.94721 0.93221 0.94597 0.90549 1.58580 1.13359 1.07246 1.57159 1.21074 0.98401 0.96069 0.97501 1.19949 0.94679 0.94584 0.99642 1.21192 1.00131 0.92418 1.01527 1.21423 0.94418 0.98546 0.99277 1.21494 0.95334 0.98338 0.99529 1.21444 1.00768 0.92246 0.99243 1.21264 0.93272 0.99839 1.00626 0.90971 0.84987 0.84682 0.90830 0.92778 0.86471 0.83790 0.83324 0.83758 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.50 11.72 21.91 0.26 -47.24 16 2 C 0.03 1.50 5.50 85.43 0.47 1.97 16 3 Si 0.99 39.91 29.56 68.60 2.03 41.93 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.56 -31.67 9.07 23.49 0.21 -31.46 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 9 C 0.35 20.20 6.21 26.37 0.16 20.36 16 10 O -0.58 -38.68 14.75 -3.52 -0.05 -38.73 16 11 C 0.07 3.21 3.07 44.17 0.14 3.35 16 12 H 0.08 3.40 8.14 -2.38 -0.02 3.39 16 13 N -0.83 -35.06 8.82 -171.82 -1.52 -36.57 16 14 C -0.09 -3.48 4.96 29.85 0.15 -3.34 16 15 C -0.09 -2.76 4.73 -19.86 -0.09 -2.86 16 16 C -0.13 -3.67 8.39 22.27 0.19 -3.48 16 17 C -0.12 -2.59 10.05 22.27 0.22 -2.36 16 18 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 19 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 20 C -0.13 -3.67 9.70 22.27 0.22 -3.45 16 21 H 0.28 15.11 8.29 -92.71 -0.77 14.34 16 22 H 0.34 14.51 8.62 -89.69 -0.77 13.73 16 23 H 0.34 11.98 7.32 -89.69 -0.66 11.32 16 24 H 0.07 2.88 7.96 -2.38 -0.02 2.86 16 25 H 0.05 2.16 8.09 -2.39 -0.02 2.14 16 26 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 27 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 29 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.12 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -71.66 264.51 2.55 -69.11 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.28 Total: 37.52 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 2.11 Total: -26.02 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -1.26 Total: -83.82 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.05 Total: -38.73 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.93 kcal Total: -71.66 2.55 -69.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238613229.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.213 kcal (2) G-P(sol) polarization free energy of solvation -71.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds