Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48498 * 109.47141 * 270.00311 * 3 2 1 5 5 H 1.48505 * 109.46875 * 30.00449 * 3 2 1 6 6 H 1.48499 * 109.47153 * 149.99916 * 3 2 1 7 7 C 1.37875 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.38288 * 119.82657 * 80.00042 * 12 9 7 14 14 C 1.38342 * 119.77148 * 180.15467 * 13 12 9 15 15 C 1.37743 * 119.97663 * 359.89920 * 14 13 12 16 16 C 1.38881 * 120.78675 * 359.80105 * 15 14 13 17 17 C 1.37931 * 119.82890 * 259.72319 * 12 9 7 18 18 O 1.36131 * 111.24011 * 180.67324 * 16 15 14 19 19 C 1.43767 * 109.25836 * 341.09845 * 18 16 15 20 20 C 1.51651 * 132.17743 * 179.44956 * 15 14 13 21 21 H 0.96991 * 120.00497 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 23 23 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 24 24 H 1.08002 * 120.11657 * 0.16969 * 13 12 9 25 25 H 1.08001 * 120.01371 * 179.88604 * 14 13 12 26 26 H 1.08002 * 119.87357 * 0.04155 * 17 12 9 27 27 H 1.09001 * 110.74798 * 269.36772 * 19 18 16 28 28 H 1.08991 * 110.91197 * 146.08292 * 19 18 16 29 29 H 1.09005 * 110.93728 * 313.94757 * 20 15 14 30 30 H 1.08999 * 110.93598 * 77.59019 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4062 -2.5778 1.1974 12 6 2.2305 -3.6445 -0.0027 13 6 2.8358 -4.0329 1.1784 14 6 3.7371 -5.0824 1.1756 15 6 4.0269 -5.7376 -0.0009 16 6 3.4209 -5.3608 -1.1923 17 6 2.5142 -4.3036 -1.1807 18 8 3.8351 -6.1442 -2.2257 19 6 5.0625 -6.7986 -1.8622 20 6 4.9581 -6.8909 -0.3214 21 1 -0.4850 0.8399 0.0004 22 1 -0.1577 -3.4145 1.1881 23 1 0.9639 -2.5269 2.0367 24 1 2.6056 -3.5189 2.0999 25 1 4.2136 -5.3879 2.0955 26 1 2.0341 -3.9964 -2.0981 27 1 5.9226 -6.1966 -2.1555 28 1 5.1195 -7.7926 -2.3056 29 1 5.9327 -6.7457 0.1446 30 1 4.5202 -7.8413 -0.0164 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238627005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = -5.856205 kcal Electronic energy + Delta-G solvation = -14350.366138 eV Core-core repulsion = 11917.788901 eV Total energy + Delta-G solvation = -2432.577237 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.67617 -37.50928 -34.22821 -32.20613 -31.23410 -29.56011 -28.32442 -25.87428 -23.27103 -22.40258 -21.51199 -19.93527 -16.67506 -16.45478 -16.22676 -15.76146 -15.10135 -14.46054 -14.01498 -13.53963 -13.17781 -12.97905 -12.68319 -12.39886 -12.04303 -11.64666 -11.33683 -11.16049 -10.84780 -10.74161 -10.44864 -10.37939 -9.74379 -9.21987 -8.43104 -8.11385 -7.64016 -7.07274 -5.87525 -4.02555 1.88192 1.92272 3.34610 3.41356 3.44304 3.57225 4.25879 4.51435 4.63652 4.80656 5.05975 5.25941 5.36863 5.49485 5.56442 5.76113 5.85915 5.99792 6.03935 6.17568 6.30697 6.60498 6.84736 6.91223 7.08070 7.12601 7.58419 7.69328 7.91169 8.18272 8.62588 9.00496 9.14362 9.66001 11.16923 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.042848 B = 0.007373 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.313549 B = 3796.794493 C = 3944.422808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.084 3.916 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.054 0.946 9 C 0.253 3.747 10 H 0.049 0.951 11 N -0.808 5.808 12 C -0.037 4.037 13 C -0.148 4.148 14 C -0.073 4.073 15 C -0.205 4.205 16 C 0.097 3.903 17 C -0.137 4.137 18 O -0.311 6.311 19 C 0.052 3.948 20 C -0.104 4.104 21 H 0.256 0.744 22 H 0.299 0.701 23 H 0.318 0.682 24 H 0.123 0.877 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.989 -11.767 0.325 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.143 3.857 10 H 0.067 0.933 11 N -0.334 5.334 12 C -0.039 4.039 13 C -0.166 4.166 14 C -0.092 4.092 15 C -0.206 4.206 16 C 0.053 3.947 17 C -0.156 4.156 18 O -0.226 6.226 19 C -0.023 4.023 20 C -0.141 4.141 21 H 0.066 0.934 22 H 0.109 0.891 23 H 0.131 0.869 24 H 0.141 0.859 25 H 0.132 0.868 26 H 0.141 0.859 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.359 -10.996 -0.156 13.232 hybrid contribution 1.286 -0.032 0.324 1.326 sum 8.645 -11.028 0.168 14.014 Atomic orbital electron populations 1.70100 1.05674 1.25764 1.46596 1.24943 0.94649 0.98543 0.94158 0.86737 0.79992 0.83954 0.78038 1.20734 1.21220 1.20006 1.20810 0.92260 0.89313 1.54561 0.92763 1.18250 0.87507 0.88697 0.91207 0.93344 1.59226 1.27895 1.41980 1.04251 1.21576 0.96106 0.95245 0.91019 1.20887 0.98806 0.98052 0.98882 1.20184 0.97671 0.95492 0.95819 1.20520 1.04757 1.00878 0.94486 1.19605 0.96853 0.92174 0.86108 1.20263 1.01098 0.94588 0.99665 1.86779 1.38987 1.58059 1.38728 1.23720 0.86356 0.97817 0.94440 1.21667 0.99424 0.97412 0.95572 0.93392 0.89071 0.86920 0.85869 0.86828 0.85874 0.91038 0.88272 0.89856 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.61 12.77 55.43 0.71 -23.91 16 2 C 0.08 2.34 5.39 -17.82 -0.10 2.24 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.58 8.70 -34.44 -0.30 -14.88 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.25 6.26 2.84 -70.01 -0.20 6.06 16 10 H 0.05 1.32 7.98 -51.93 -0.41 0.90 16 11 N -0.81 -18.78 8.36 -6.65 -0.06 -18.83 16 12 C -0.04 -0.79 4.88 -104.72 -0.51 -1.30 16 13 C -0.15 -2.82 9.30 -39.52 -0.37 -3.19 16 14 C -0.07 -1.23 10.03 -39.72 -0.40 -1.63 16 15 C -0.21 -3.43 6.27 -104.10 -0.65 -4.08 16 16 C 0.10 1.82 7.04 -38.96 -0.27 1.54 16 17 C -0.14 -2.82 9.68 -39.31 -0.38 -3.20 16 18 O -0.31 -5.29 11.10 -20.16 -0.22 -5.52 16 19 C 0.05 0.63 8.01 38.06 0.30 0.93 16 20 C -0.10 -1.27 7.12 -26.52 -0.19 -1.46 16 21 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.30 6.23 9.06 -39.29 -0.36 5.88 16 23 H 0.32 6.98 7.33 -39.29 -0.29 6.69 16 24 H 0.12 2.26 6.65 -52.49 -0.35 1.91 16 25 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 26 H 0.12 2.51 8.02 -52.49 -0.42 2.09 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 258.06 15.07 3.89 3.89 Total: -1.00 -30.50 258.06 -7.25 -37.75 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.48 Total: 9.21 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -3.06 Total: -18.96 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.65 Total: -42.74 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.22 Total: -5.52 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.50 -7.25 -37.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238627005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.895 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds