Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 120.00360 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00124 * 3 2 1 5 5 H 1.48501 * 109.47356 * 30.00052 * 3 2 1 6 6 H 1.48499 * 109.47321 * 150.00192 * 3 2 1 7 7 C 1.37876 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00356 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47122 * 60.00596 * 9 7 2 11 11 N 1.46906 * 109.47167 * 300.00384 * 9 7 2 12 12 C 1.50697 * 109.47576 * 180.02562 * 9 7 2 13 13 C 1.38402 * 120.00890 * 99.99761 * 12 9 7 14 14 C 1.38243 * 119.76421 * 179.97438 * 13 12 9 15 15 C 1.37974 * 120.35053 * 359.79868 * 14 13 12 16 16 C 1.39234 * 120.24463 * 0.02988 * 15 14 13 17 17 C 1.37692 * 120.01260 * 279.73165 * 12 9 7 18 18 C 1.51652 * 132.16668 * 1.53833 * 17 12 9 19 19 C 1.54703 * 101.99074 * 163.80325 * 18 17 12 20 20 O 1.36139 * 129.90885 * 180.66800 * 16 15 14 21 21 H 0.97005 * 119.99198 * 359.97438 * 1 2 3 22 22 H 1.00896 * 111.00309 * 299.99562 * 11 9 7 23 23 H 1.00902 * 110.99923 * 63.95725 * 11 9 7 24 24 H 1.07990 * 120.11714 * 0.02562 * 13 12 9 25 25 H 1.07996 * 119.82416 * 179.77836 * 14 13 12 26 26 H 1.08006 * 119.88054 * 180.02562 * 15 14 13 27 27 H 1.09000 * 111.08166 * 45.55371 * 18 17 12 28 28 H 1.08998 * 110.77588 * 281.92231 * 18 17 12 29 29 H 1.09001 * 110.75234 * 266.74268 * 19 18 17 30 30 H 1.08997 * 110.74988 * 143.38894 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2301 -3.6447 -0.0005 13 6 2.5217 -4.3060 1.1798 14 6 3.4203 -5.3565 1.1738 15 6 4.0240 -5.7510 -0.0024 16 6 3.7334 -5.0933 -1.1947 17 6 2.8308 -4.0372 -1.1757 18 6 2.7376 -3.5069 -2.5933 19 6 3.9759 -4.1516 -3.2598 20 8 4.1979 -5.3216 -2.4539 21 1 -0.4849 0.8402 0.0004 22 1 0.9650 -2.5260 2.0381 23 1 -0.3006 -1.8577 1.1910 24 1 2.0483 -4.0031 2.1019 25 1 3.6513 -5.8710 2.0949 26 1 4.7246 -6.5730 0.0016 27 1 2.8081 -2.4193 -2.6105 28 1 1.8180 -3.8432 -3.0723 29 1 4.8336 -3.4807 -3.2117 30 1 3.7587 -4.4291 -4.2913 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238627425.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = -30.411924 kcal Electronic energy + Delta-G solvation = -14684.542011 eV Core-core repulsion = 12250.899958 eV Total energy + Delta-G solvation = -2433.642053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.90693 -38.73722 -36.32668 -33.75607 -32.98577 -30.33054 -29.96169 -27.95116 -24.91607 -23.90521 -22.57280 -21.27585 -18.62334 -17.97647 -17.72780 -16.99114 -16.60230 -16.38759 -15.74702 -14.85863 -14.63139 -14.14913 -13.88965 -13.74472 -13.46369 -13.23772 -12.90292 -12.84648 -12.57817 -12.26948 -12.19871 -12.02250 -11.57638 -11.23028 -10.73170 -9.52046 -9.18655 -8.95094 -8.13740 -6.39522 0.52064 0.61838 1.35054 1.37879 1.47319 2.34148 2.42897 2.95387 3.03385 3.68718 3.84711 4.07440 4.17855 4.31141 4.48502 4.52714 4.64135 4.70947 4.83522 4.91129 5.02019 5.25198 5.33792 5.52317 5.59299 5.67552 5.78921 5.97758 6.05942 6.38961 6.62619 6.90819 7.09676 7.36598 8.80660 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.030570 B = 0.010043 C = 0.008599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.724238 B = 2787.401987 C = 3255.504890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.043 0.957 9 C 0.247 3.753 10 H 0.011 0.989 11 N -0.843 5.843 12 C -0.016 4.016 13 C -0.153 4.153 14 C -0.084 4.084 15 C -0.161 4.161 16 C 0.082 3.918 17 C -0.194 4.194 18 C -0.109 4.109 19 C 0.057 3.943 20 O -0.319 6.319 21 H 0.268 0.732 22 H 0.320 0.680 23 H 0.345 0.655 24 H 0.130 0.870 25 H 0.161 0.839 26 H 0.147 0.853 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.946 -6.850 -1.829 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.061 0.939 9 C 0.137 3.863 10 H 0.029 0.971 11 N -0.372 5.372 12 C -0.017 4.017 13 C -0.171 4.171 14 C -0.102 4.102 15 C -0.179 4.179 16 C 0.037 3.963 17 C -0.196 4.196 18 C -0.146 4.146 19 C -0.017 4.017 20 O -0.234 6.234 21 H 0.077 0.923 22 H 0.131 0.869 23 H 0.160 0.840 24 H 0.148 0.852 25 H 0.179 0.821 26 H 0.164 0.836 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.674 -7.649 -2.217 10.391 hybrid contribution 0.306 2.330 0.054 2.351 sum 6.980 -5.319 -2.163 9.038 Atomic orbital electron populations 1.69845 1.06884 1.27998 1.50683 1.25703 0.95706 1.02160 0.94017 0.85577 0.78591 0.79285 0.78303 1.20079 1.20538 1.19826 1.21874 0.93016 0.92057 1.52100 0.93855 1.17704 0.88942 0.89216 0.90446 0.97137 1.59512 1.18204 1.55319 1.04211 1.19693 0.95199 0.94716 0.92067 1.21082 1.00482 0.97719 0.97859 1.21157 0.94948 0.95983 0.98084 1.20435 1.04935 1.03767 0.88791 1.19792 0.94173 0.95931 0.86386 1.20758 1.01767 1.00890 0.96149 1.21724 0.99594 1.01825 0.91486 1.24000 0.96683 0.85013 0.95985 1.86714 1.79530 1.38649 1.18539 0.92263 0.86938 0.83993 0.85241 0.82112 0.83560 0.90076 0.89907 0.89878 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.20 11.54 21.45 0.25 -49.95 16 2 C 0.02 1.30 5.38 84.65 0.46 1.76 16 3 Si 0.96 42.42 29.54 68.60 2.03 44.45 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -29.68 8.70 25.60 0.22 -29.46 16 8 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 9 C 0.25 12.62 2.77 43.42 0.12 12.74 16 10 H 0.01 0.62 8.10 -2.39 -0.02 0.60 16 11 N -0.84 -40.73 8.67 -174.95 -1.52 -42.24 16 12 C -0.02 -0.72 5.01 -19.96 -0.10 -0.82 16 13 C -0.15 -5.96 9.27 22.31 0.21 -5.75 16 14 C -0.08 -2.66 10.02 22.21 0.22 -2.44 16 15 C -0.16 -5.20 10.06 22.45 0.23 -4.97 16 16 C 0.08 3.04 7.03 22.68 0.16 3.20 16 17 C -0.19 -8.09 6.08 -19.52 -0.12 -8.21 16 18 C -0.11 -3.95 6.85 30.73 0.21 -3.74 16 19 C 0.06 1.63 8.01 72.56 0.58 2.21 16 20 O -0.32 -10.80 11.11 -95.14 -1.06 -11.86 16 21 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 22 H 0.32 14.45 7.28 -89.70 -0.65 13.80 16 23 H 0.35 17.86 7.08 -89.69 -0.63 17.22 16 24 H 0.13 4.83 6.26 -2.92 -0.02 4.81 16 25 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 26 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 27 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 28 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -60.45 254.80 1.76 -58.69 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -0.12 Total: 36.40 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 2.19 Total: -35.49 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -1.27 Total: -92.20 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.06 Total: -11.86 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -60.45 1.76 -58.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238627425.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.274 kcal (2) G-P(sol) polarization free energy of solvation -60.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds