Wall clock time and date at job start Mon Mar 30 2020 03:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.46877 * 2 1 4 4 H 1.08002 * 119.99912 * 244.18557 * 3 2 1 5 5 C 1.37878 * 119.99962 * 64.18652 * 3 2 1 6 6 N 1.31511 * 119.99970 * 359.97438 * 5 3 2 7 7 Si 1.86796 * 119.99880 * 179.97438 * 5 3 2 8 8 H 1.48510 * 109.47266 * 59.99849 * 7 5 3 9 9 H 1.48497 * 109.47216 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47212 * 300.00241 * 7 5 3 11 11 C 1.50700 * 109.46869 * 119.99675 * 2 1 3 12 12 N 1.34779 * 119.99725 * 180.02562 * 11 2 1 13 13 O 1.21277 * 119.99892 * 0.02562 * 11 2 1 14 14 C 1.50699 * 109.47403 * 239.99779 * 2 1 3 15 15 C 1.38242 * 119.99747 * 66.13393 * 14 2 1 16 16 C 1.38232 * 119.99528 * 179.80916 * 15 14 2 17 17 C 1.38231 * 120.00213 * 0.39763 * 16 15 14 18 18 C 1.38235 * 119.99939 * 359.86217 * 17 16 15 19 19 C 1.38229 * 119.99978 * 246.40753 * 14 2 1 20 20 H 1.09002 * 109.47662 * 300.00624 * 1 2 3 21 21 H 1.09007 * 109.46598 * 60.00536 * 1 2 3 22 22 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99749 * 179.97438 * 6 5 3 24 24 H 0.96998 * 120.00016 * 359.97438 * 12 11 2 25 25 H 0.96999 * 119.99735 * 179.72569 * 12 11 2 26 26 H 1.07995 * 120.00134 * 0.02562 * 15 14 2 27 27 H 1.08001 * 119.99731 * 180.23323 * 16 15 14 28 28 H 1.08002 * 120.00150 * 179.83477 * 17 16 15 29 29 H 1.08007 * 120.00071 * 179.97438 * 18 17 16 30 30 H 1.07996 * 119.99992 * 359.97438 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 1 2.5963 1.7943 -0.8420 5 6 1.7719 2.2442 1.0749 6 7 1.0847 1.7896 2.1000 7 14 2.3951 4.0051 1.0752 8 1 1.8189 4.7344 -0.0831 9 1 1.9847 4.6752 2.3352 10 1 3.8765 4.0059 0.9733 11 6 2.0323 -0.7103 1.2305 12 7 3.3574 -0.8330 1.4441 13 8 1.2441 -1.1716 2.0286 14 6 2.0324 -0.7104 -1.2304 15 6 1.8062 -0.1689 -2.4820 16 6 2.2705 -0.8185 -3.6104 17 6 2.9538 -2.0139 -3.4877 18 6 3.1753 -2.5581 -2.2365 19 6 2.7145 -1.9064 -1.1078 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 0.9018 2.3687 2.8563 24 1 3.9877 -0.4644 0.8056 25 1 3.6807 -1.2868 2.2381 26 1 1.2697 0.7635 -2.5780 27 1 2.0970 -0.3935 -4.5880 28 1 3.3142 -2.5228 -4.3695 29 1 3.7089 -3.4923 -2.1406 30 1 2.8878 -2.3315 -0.1303 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238803502.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:00 Heat of formation + Delta-G solvation = -21.698086 kcal Electronic energy + Delta-G solvation = -15031.603760 eV Core-core repulsion = 12598.339568 eV Total energy + Delta-G solvation = -2433.264192 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.34392 -37.48922 -34.04518 -32.29102 -31.54170 -30.20293 -28.31890 -25.23899 -23.25384 -21.89621 -20.91431 -18.73611 -16.72636 -16.49965 -15.85229 -14.99958 -14.72001 -14.12408 -13.86863 -13.42129 -12.82546 -12.49101 -12.29995 -11.93359 -11.58504 -11.13339 -10.99199 -10.89776 -10.64527 -10.38619 -10.31969 -9.78478 -9.36878 -8.69793 -8.37213 -8.25476 -8.21128 -7.90514 -6.11012 -4.26078 2.00528 2.05206 3.23607 3.30412 3.31200 4.22657 4.33556 4.48140 4.96999 5.20118 5.44821 5.51968 5.60926 5.90188 6.14856 6.21832 6.44657 6.62075 6.71008 6.95500 7.00788 7.06039 7.11698 7.21504 7.48520 7.63493 7.68796 7.91606 8.06167 8.14540 8.62532 8.81824 9.39930 9.80066 10.90163 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.011989 C = 0.010129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.702914 B = 2334.833060 C = 2763.774415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.086 3.914 3 C -0.523 4.523 4 H 0.067 0.933 5 C 0.068 3.932 6 N -0.860 5.860 7 Si 0.896 3.104 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.276 1.276 11 C 0.560 3.440 12 N -0.865 5.865 13 O -0.562 6.562 14 C -0.033 4.033 15 C -0.105 4.105 16 C -0.127 4.127 17 C -0.146 4.146 18 C -0.125 4.125 19 C -0.138 4.138 20 H 0.085 0.915 21 H 0.034 0.966 22 H 0.019 0.981 23 H 0.266 0.734 24 H 0.395 0.605 25 H 0.378 0.622 26 H 0.125 0.875 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.530 -3.959 -7.217 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.083 3.917 3 C -0.561 4.561 4 H 0.086 0.914 5 C -0.137 4.137 6 N -0.495 5.495 7 Si 0.724 3.276 8 H -0.200 1.200 9 H -0.213 1.213 10 H -0.202 1.202 11 C 0.348 3.652 12 N -0.427 5.427 13 O -0.439 6.439 14 C -0.033 4.033 15 C -0.123 4.123 16 C -0.145 4.145 17 C -0.164 4.164 18 C -0.143 4.143 19 C -0.157 4.157 20 H 0.104 0.896 21 H 0.053 0.947 22 H 0.038 0.962 23 H 0.076 0.924 24 H 0.223 0.777 25 H 0.206 0.794 26 H 0.143 0.857 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.761 -4.129 -6.619 8.661 hybrid contribution 0.896 1.092 0.156 1.421 sum 4.657 -3.038 -6.463 8.526 Atomic orbital electron populations 1.21560 0.94734 0.98373 1.02199 1.17462 0.94440 0.94463 0.85379 1.20819 1.36966 0.93555 1.04786 0.91440 1.25080 0.94586 0.98673 0.95409 1.69983 1.36783 1.36039 1.06696 0.86583 0.79247 0.84369 0.77427 1.20031 1.21292 1.20168 1.20864 0.81104 0.75221 0.88061 1.43913 1.08518 1.62750 1.27547 1.90525 1.55651 1.49409 1.48296 1.20255 0.94099 0.93096 0.95837 1.21056 0.99742 0.99857 0.91623 1.21072 0.99422 0.95847 0.98175 1.20919 1.01623 0.96960 0.96881 1.20996 1.00863 0.99574 0.92838 1.21389 0.99708 0.95849 0.98704 0.89591 0.94662 0.96230 0.92419 0.77748 0.79377 0.85738 0.87000 0.87269 0.87145 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 7.45 37.16 0.28 -2.46 16 2 C 0.09 2.05 0.45 -157.96 -0.07 1.98 16 3 C -0.52 -13.14 7.35 -34.44 -0.25 -13.39 16 4 H 0.07 1.66 7.35 -52.49 -0.39 1.27 16 5 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 6 N -0.86 -23.98 10.38 55.43 0.58 -23.40 16 7 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 8 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 9 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 C 0.56 13.76 3.96 -10.98 -0.04 13.72 16 12 N -0.87 -17.45 7.28 31.22 0.23 -17.22 16 13 O -0.56 -15.81 16.67 5.56 0.09 -15.72 16 14 C -0.03 -0.67 4.62 -104.62 -0.48 -1.16 16 15 C -0.10 -1.98 8.54 -39.58 -0.34 -2.32 16 16 C -0.13 -2.04 10.05 -39.59 -0.40 -2.44 16 17 C -0.15 -2.21 10.05 -39.59 -0.40 -2.61 16 18 C -0.12 -2.00 10.05 -39.58 -0.40 -2.39 16 19 C -0.14 -2.60 8.55 -39.59 -0.34 -2.93 16 20 H 0.09 2.37 6.37 -51.93 -0.33 2.04 16 21 H 0.03 0.80 7.78 -51.92 -0.40 0.39 16 22 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 23 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.39 7.34 8.28 -40.82 -0.34 7.00 16 25 H 0.38 6.80 8.93 -40.82 -0.36 6.44 16 26 H 0.12 2.36 7.78 -52.49 -0.41 1.95 16 27 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.12 2.30 5.73 -52.49 -0.30 2.00 16 LS Contribution 254.21 15.07 3.83 3.83 Total: -1.00 -30.05 254.21 -6.19 -36.24 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -3.36 Total: 13.34 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.54 Total: -12.32 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.80 Total: -40.62 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.09 Total: -15.72 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.05 -6.19 -36.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238803502.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.540 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds