Wall clock time and date at job start Mon Mar 30 2020 03:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.46877 * 2 1 4 4 H 1.08002 * 119.99912 * 244.18557 * 3 2 1 5 5 C 1.37878 * 119.99962 * 64.18652 * 3 2 1 6 6 N 1.31511 * 119.99970 * 359.97438 * 5 3 2 7 7 Si 1.86796 * 119.99880 * 179.97438 * 5 3 2 8 8 H 1.48510 * 109.47266 * 59.99849 * 7 5 3 9 9 H 1.48497 * 109.47216 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47212 * 300.00241 * 7 5 3 11 11 C 1.50700 * 109.46869 * 119.99675 * 2 1 3 12 12 N 1.34779 * 119.99725 * 180.02562 * 11 2 1 13 13 O 1.21277 * 119.99892 * 0.02562 * 11 2 1 14 14 C 1.50699 * 109.47403 * 239.99779 * 2 1 3 15 15 C 1.38242 * 119.99747 * 66.13393 * 14 2 1 16 16 C 1.38232 * 119.99528 * 179.80916 * 15 14 2 17 17 C 1.38231 * 120.00213 * 0.39763 * 16 15 14 18 18 C 1.38235 * 119.99939 * 359.86217 * 17 16 15 19 19 C 1.38229 * 119.99978 * 246.40753 * 14 2 1 20 20 H 1.09002 * 109.47662 * 300.00624 * 1 2 3 21 21 H 1.09007 * 109.46598 * 60.00536 * 1 2 3 22 22 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99749 * 179.97438 * 6 5 3 24 24 H 0.96998 * 120.00016 * 359.97438 * 12 11 2 25 25 H 0.96999 * 119.99735 * 179.72569 * 12 11 2 26 26 H 1.07995 * 120.00134 * 0.02562 * 15 14 2 27 27 H 1.08001 * 119.99731 * 180.23323 * 16 15 14 28 28 H 1.08002 * 120.00150 * 179.83477 * 17 16 15 29 29 H 1.08007 * 120.00071 * 179.97438 * 18 17 16 30 30 H 1.07996 * 119.99992 * 359.97438 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 1 2.5963 1.7943 -0.8420 5 6 1.7719 2.2442 1.0749 6 7 1.0847 1.7896 2.1000 7 14 2.3951 4.0051 1.0752 8 1 1.8189 4.7344 -0.0831 9 1 1.9847 4.6752 2.3352 10 1 3.8765 4.0059 0.9733 11 6 2.0323 -0.7103 1.2305 12 7 3.3574 -0.8330 1.4441 13 8 1.2441 -1.1716 2.0286 14 6 2.0324 -0.7104 -1.2304 15 6 1.8062 -0.1689 -2.4820 16 6 2.2705 -0.8185 -3.6104 17 6 2.9538 -2.0139 -3.4877 18 6 3.1753 -2.5581 -2.2365 19 6 2.7145 -1.9064 -1.1078 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 0.9018 2.3687 2.8563 24 1 3.9877 -0.4644 0.8056 25 1 3.6807 -1.2868 2.2381 26 1 1.2697 0.7635 -2.5780 27 1 2.0970 -0.3935 -4.5880 28 1 3.3142 -2.5228 -4.3695 29 1 3.7089 -3.4923 -2.1406 30 1 2.8878 -2.3315 -0.1303 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238803502.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:00 Heat of formation + Delta-G solvation = -41.871276 kcal Electronic energy + Delta-G solvation = -15032.478535 eV Core-core repulsion = 12598.339568 eV Total energy + Delta-G solvation = -2434.138967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.99281 -39.12101 -35.90366 -34.12253 -33.33459 -31.53866 -29.90771 -27.24457 -25.00051 -23.30084 -22.44727 -20.52043 -18.60490 -17.97635 -17.62116 -16.67438 -16.55601 -15.61073 -15.35544 -15.11278 -14.33052 -14.24970 -13.90858 -13.67482 -13.34642 -12.80800 -12.77340 -12.66597 -12.42575 -12.19160 -11.78600 -11.65383 -11.12873 -10.67383 -10.18219 -10.11865 -9.62584 -9.34276 -8.08914 -6.29384 0.67380 0.70783 1.44486 1.45588 1.53030 2.33240 2.45657 3.08633 3.17631 3.32517 4.20461 4.23943 4.34632 4.47616 4.67410 4.84099 4.90076 4.97382 5.05987 5.26398 5.35277 5.40297 5.63063 5.75131 5.77394 5.90576 5.99325 6.21356 6.32440 6.38754 6.71702 6.99016 7.39927 7.96350 8.90692 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.029821 B = 0.011989 C = 0.010129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.702914 B = 2334.833060 C = 2763.774415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.079 3.921 3 C -0.519 4.519 4 H 0.072 0.928 5 C 0.022 3.978 6 N -0.896 5.896 7 Si 0.956 3.044 8 H -0.269 1.269 9 H -0.295 1.295 10 H -0.267 1.267 11 C 0.557 3.443 12 N -0.846 5.846 13 O -0.607 6.607 14 C -0.060 4.060 15 C -0.121 4.121 16 C -0.121 4.121 17 C -0.134 4.134 18 C -0.120 4.120 19 C -0.152 4.152 20 H 0.051 0.949 21 H 0.045 0.955 22 H 0.014 0.986 23 H 0.259 0.741 24 H 0.405 0.595 25 H 0.390 0.610 26 H 0.115 0.885 27 H 0.143 0.857 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -4.358 -9.651 12.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.076 3.924 3 C -0.556 4.556 4 H 0.090 0.910 5 C -0.180 4.180 6 N -0.532 5.532 7 Si 0.782 3.218 8 H -0.194 1.194 9 H -0.221 1.221 10 H -0.191 1.191 11 C 0.345 3.655 12 N -0.408 5.408 13 O -0.489 6.489 14 C -0.060 4.060 15 C -0.139 4.139 16 C -0.139 4.139 17 C -0.152 4.152 18 C -0.138 4.138 19 C -0.170 4.170 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.033 0.967 23 H 0.068 0.932 24 H 0.234 0.766 25 H 0.220 0.780 26 H 0.133 0.867 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.159 0.841 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.585 -4.527 -9.082 11.583 hybrid contribution 0.374 1.134 0.814 1.445 sum 5.959 -3.392 -8.268 10.742 Atomic orbital electron populations 1.21439 0.96234 0.97583 1.00864 1.17421 0.93539 0.94489 0.86998 1.21071 1.35965 0.94234 1.04379 0.90981 1.25804 0.94816 1.02227 0.95167 1.70165 1.38620 1.37102 1.07341 0.85633 0.79082 0.80075 0.77024 1.19369 1.22103 1.19142 1.21036 0.81955 0.74722 0.87792 1.43645 1.07350 1.61811 1.28014 1.90492 1.57061 1.51600 1.49699 1.20027 0.96538 0.94416 0.95046 1.21079 1.00693 1.00116 0.92061 1.21414 0.98168 0.95875 0.98454 1.21395 0.99736 0.96208 0.97873 1.21344 0.99931 1.00278 0.92224 1.21381 1.00460 0.95617 0.99580 0.93009 0.93647 0.96692 0.93169 0.76566 0.78026 0.86734 0.83874 0.83275 0.84064 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.27 7.45 71.98 0.54 -4.74 16 2 C 0.08 3.82 0.45 -54.42 -0.02 3.79 16 3 C -0.52 -26.07 7.35 25.60 0.19 -25.88 16 4 H 0.07 3.49 7.35 -2.91 -0.02 3.47 16 5 C 0.02 1.13 5.15 84.66 0.44 1.57 16 6 N -0.90 -51.36 10.38 21.45 0.22 -51.13 16 7 Si 0.96 41.66 29.54 68.60 2.03 43.69 16 8 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 9 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 C 0.56 27.87 3.96 87.66 0.35 28.21 16 12 N -0.85 -34.02 7.28 -173.53 -1.26 -35.28 16 13 O -0.61 -35.37 16.67 -3.02 -0.05 -35.42 16 14 C -0.06 -2.44 4.62 -19.87 -0.09 -2.53 16 15 C -0.12 -4.40 8.54 22.27 0.19 -4.21 16 16 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 17 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 18 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16 19 C -0.15 -5.47 8.55 22.27 0.19 -5.28 16 20 H 0.05 2.98 6.37 -2.39 -0.02 2.97 16 21 H 0.04 2.12 7.78 -2.38 -0.02 2.10 16 22 H 0.01 0.72 8.10 -2.39 -0.02 0.70 16 23 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 24 H 0.40 14.74 8.28 -92.71 -0.77 13.97 16 25 H 0.39 13.93 8.93 -92.71 -0.83 13.10 16 26 H 0.11 4.27 7.78 -2.91 -0.02 4.24 16 27 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 28 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 29 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.11 4.16 5.73 -2.91 -0.02 4.14 16 Total: -1.00 -65.91 254.21 2.95 -62.96 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -0.43 Total: 33.83 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 2.44 Total: -18.64 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -1.04 Total: -86.42 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.05 Total: -35.42 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -65.91 2.95 -62.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238803502.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.087 kcal (2) G-P(sol) polarization free energy of solvation -65.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds