Wall clock time and date at job start Mon Mar 30 2020 03:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99710 * 2 1 4 4 H 1.48507 * 109.46975 * 269.99448 * 3 2 1 5 5 H 1.48495 * 109.47192 * 29.99411 * 3 2 1 6 6 H 1.48500 * 109.47288 * 149.99768 * 3 2 1 7 7 C 1.37877 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00194 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47402 * 180.02562 * 9 7 2 11 11 C 1.50703 * 113.00259 * 309.67404 * 10 9 7 12 12 C 1.38223 * 119.62264 * 162.86006 * 11 10 9 13 13 C 1.38628 * 119.16031 * 179.97438 * 12 11 10 14 14 C 1.38672 * 118.42475 * 359.97438 * 13 12 11 15 15 C 1.38186 * 119.15778 * 0.02562 * 14 13 12 16 16 N 1.31856 * 119.61279 * 342.83478 * 11 10 9 17 17 C 1.54043 * 113.92304 * 81.59937 * 10 9 7 18 18 O 1.44179 * 85.51345 * 91.66487 * 17 10 9 19 19 C 1.44173 * 93.34061 * 24.19337 * 18 17 10 20 20 H 0.96998 * 119.99973 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47093 * 60.00387 * 9 7 2 22 22 H 1.09002 * 109.47460 * 300.00748 * 9 7 2 23 23 H 1.07995 * 120.41821 * 359.95030 * 12 11 10 24 24 H 1.08006 * 120.78822 * 180.02562 * 13 12 11 25 25 H 1.07993 * 120.42192 * 179.97438 * 14 13 12 26 26 H 1.08001 * 119.60956 * 180.27218 * 15 14 13 27 27 H 1.09002 * 113.85950 * 205.80906 * 17 10 9 28 28 H 1.08996 * 113.86458 * 337.51247 * 17 10 9 29 29 H 1.09005 * 113.86393 * 221.65717 * 19 18 17 30 30 H 1.09000 * 113.87066 * 89.95931 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 6 3.3827 -3.4871 1.0683 12 6 3.4587 -4.8644 0.9806 13 6 2.8679 -5.6377 1.9680 14 6 2.2204 -4.9939 3.0116 15 6 2.1852 -3.6126 3.0322 16 7 2.7579 -2.9088 2.0752 17 6 4.0365 -3.2936 -1.3921 18 8 5.3906 -2.8067 -1.4827 19 6 5.5566 -2.7534 -0.0515 20 1 -0.4850 0.8400 -0.0004 21 1 3.8746 -0.6800 0.8912 22 1 3.8753 -0.6802 -0.8888 23 1 3.9714 -5.3322 0.1532 24 1 2.9118 -6.7161 1.9258 25 1 1.7488 -5.5647 3.7977 26 1 1.6867 -3.1036 3.8439 27 1 3.9595 -4.3806 -1.3677 28 1 3.3532 -2.8319 -2.1048 29 1 6.0790 -1.8632 0.2990 30 1 5.9437 -3.6754 0.3822 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258566153.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:17 Heat of formation + Delta-G solvation = 30.033121 kcal Electronic energy + Delta-G solvation = -14820.196544 eV Core-core repulsion = 12389.175585 eV Total energy + Delta-G solvation = -2431.020959 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66978 -38.89287 -33.46008 -31.96502 -31.74431 -29.53557 -26.91173 -26.11615 -23.23352 -22.72348 -21.95471 -18.56531 -17.12075 -16.50850 -15.80710 -15.46102 -15.28210 -14.96153 -14.30037 -13.90328 -13.29984 -12.81337 -12.72207 -12.42191 -11.69763 -11.59905 -11.48167 -10.84521 -10.65152 -10.27884 -10.01143 -9.67430 -9.42833 -9.14277 -9.00292 -8.60289 -8.42035 -8.39206 -5.91394 -3.84774 1.55707 1.78348 3.39021 3.46016 3.50664 4.15548 4.25213 4.56138 4.82656 5.02104 5.16374 5.23781 5.38373 5.45305 5.51636 5.56559 5.64072 5.81838 6.03011 6.13099 6.21685 6.40020 6.49165 6.55217 6.55332 6.77820 7.08671 7.29566 7.39904 7.86988 8.63471 8.72902 9.11760 9.70853 11.22534 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.025010 B = 0.012442 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.283733 B = 2249.888728 C = 2996.742869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.066 3.934 3 Si 0.875 3.125 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.483 4.483 8 H 0.068 0.932 9 C 0.018 3.982 10 C -0.059 4.059 11 C 0.162 3.838 12 C -0.185 4.185 13 C -0.084 4.084 14 C -0.190 4.190 15 C 0.099 3.901 16 N -0.426 5.426 17 C 0.046 3.954 18 O -0.380 6.380 19 C 0.040 3.960 20 H 0.260 0.740 21 H 0.030 0.970 22 H 0.021 0.979 23 H 0.127 0.873 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.149 0.851 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.614 -9.676 3.633 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.521 4.521 8 H 0.086 0.914 9 C -0.019 4.019 10 C -0.060 4.060 11 C 0.024 3.976 12 C -0.205 4.205 13 C -0.110 4.110 14 C -0.210 4.210 15 C -0.059 4.059 16 N -0.133 5.133 17 C -0.031 4.031 18 O -0.298 6.298 19 C -0.037 4.037 20 H 0.070 0.930 21 H 0.048 0.952 22 H 0.039 0.961 23 H 0.145 0.855 24 H 0.143 0.857 25 H 0.143 0.857 26 H 0.166 0.834 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.592 -8.573 3.456 11.961 hybrid contribution 0.039 -0.169 0.210 0.272 sum 7.631 -8.742 3.665 12.169 Atomic orbital electron populations 1.69903 1.06180 1.26459 1.52304 1.24894 0.94622 0.98707 0.95146 0.86864 0.80475 0.84158 0.78255 1.20563 1.21627 1.19072 1.20793 0.88469 0.94092 1.48763 0.91374 1.19318 0.97879 0.87760 0.96953 1.22693 0.92695 0.99275 0.91289 1.21070 0.92749 0.90347 0.93442 1.21934 1.03150 0.95045 1.00384 1.21379 0.96068 0.99732 0.93791 1.22059 1.02390 0.96507 1.00031 1.22864 0.95812 0.90812 0.96387 1.67797 1.05020 1.39990 1.00460 1.24206 0.83883 0.97931 0.97032 1.89603 1.31313 1.86172 1.22750 1.24150 0.96072 1.01321 0.82203 0.93050 0.95226 0.96100 0.85486 0.85673 0.85666 0.83366 0.90862 0.87979 0.89171 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.87 22.25 27.47 -169.99 -4.67 17.58 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 7 C -0.48 -13.62 8.20 -34.44 -0.28 -13.90 16 8 H 0.07 2.10 7.25 -52.49 -0.38 1.72 16 9 C 0.02 0.44 3.17 -27.89 -0.09 0.35 16 10 C -0.06 -1.17 0.96 -154.58 -0.15 -1.32 16 11 C 0.16 3.17 5.23 -82.59 -0.43 2.74 16 12 C -0.19 -2.96 8.93 -39.44 -0.35 -3.31 16 13 C -0.08 -1.17 10.18 -39.28 -0.40 -1.57 16 14 C -0.19 -2.75 10.11 -39.44 -0.40 -3.15 16 15 C 0.10 1.75 11.18 -17.55 -0.20 1.56 16 16 N -0.43 -9.10 8.30 -9.47 -0.08 -9.18 16 17 C 0.05 0.84 8.10 37.61 0.30 1.15 16 18 O -0.38 -7.08 12.38 -35.23 -0.44 -7.52 16 19 C 0.04 0.68 8.28 37.60 0.31 0.99 16 20 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 21 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 22 H 0.02 0.51 7.48 -51.93 -0.39 0.12 16 23 H 0.13 1.72 6.31 -52.49 -0.33 1.39 16 24 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 25 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 26 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 27 H 0.07 1.12 6.02 -51.93 -0.31 0.81 16 28 H 0.10 1.96 8.10 -51.93 -0.42 1.54 16 29 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 30 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 LS Contribution 253.54 15.07 3.82 3.82 Total: -1.00 -32.68 253.54 -5.84 -38.53 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -3.47 Total: -1.07 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -1.78 Total: -14.63 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.69 Total: -36.72 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.44 Total: -7.52 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.68 -5.84 -38.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258566153.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.561 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds