Wall clock time and date at job start Mon Mar 30 2020 02:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99741 * 2 1 4 4 H 1.48505 * 109.46982 * 264.47088 * 3 2 1 5 5 H 1.48490 * 109.47554 * 24.47440 * 3 2 1 6 6 H 1.48497 * 109.47044 * 144.47527 * 3 2 1 7 7 C 1.37874 * 120.00271 * 179.72035 * 2 1 3 8 8 H 1.08001 * 119.99738 * 351.55258 * 7 2 1 9 9 C 1.50695 * 120.00349 * 171.55672 * 7 2 1 10 10 H 1.09003 * 109.26936 * 34.85759 * 9 7 2 11 11 C 1.52853 * 109.26647 * 275.35944 * 9 7 2 12 12 C 1.53428 * 108.84878 * 188.33857 * 11 9 7 13 13 N 1.46927 * 107.78198 * 63.26227 * 12 11 9 14 14 C 1.40201 * 118.89840 * 315.39322 * 13 12 11 15 15 C 1.39040 * 119.08039 * 193.30579 * 14 13 12 16 16 C 1.38016 * 120.10645 * 180.20242 * 15 14 13 17 17 C 1.38720 * 119.85560 * 359.97438 * 16 15 14 18 18 O 1.36002 * 119.97721 * 179.89116 * 17 16 15 19 19 C 1.38531 * 120.04126 * 359.91175 * 17 16 15 20 20 C 1.38514 * 120.27158 * 0.04081 * 19 17 16 21 21 H 0.97001 * 119.99875 * 0.28074 * 1 2 3 22 22 H 1.09003 * 109.56859 * 308.14468 * 11 9 7 23 23 H 1.09001 * 109.57547 * 68.52078 * 11 9 7 24 24 H 1.09004 * 109.79850 * 182.83599 * 12 11 9 25 25 H 1.09004 * 109.79542 * 303.69413 * 12 11 9 26 26 H 0.96996 * 120.54713 * 135.41160 * 13 12 11 27 27 H 1.07996 * 119.94423 * 0.17737 * 15 14 13 28 28 H 1.08006 * 120.06897 * 180.02562 * 16 15 14 29 29 H 0.96714 * 113.99846 * 90.00415 * 18 17 16 30 30 H 1.08004 * 119.86486 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6134 1.9790 -1.3936 5 1 1.3931 2.6836 0.5800 6 1 3.4834 1.4768 0.8135 7 6 2.0046 -1.1940 0.0058 8 1 1.4734 -2.1235 0.1478 9 6 3.4993 -1.2020 -0.1858 10 1 3.9269 -0.3162 0.2839 11 6 3.8162 -1.1827 -1.6809 12 6 5.3229 -1.4015 -1.8711 13 7 5.6504 -2.7387 -1.3581 14 6 5.1099 -3.1443 -0.1297 15 6 5.6246 -4.2749 0.4948 16 6 5.1056 -4.6955 1.7025 17 6 4.0691 -3.9874 2.2929 18 8 3.5543 -4.4009 3.4818 19 6 3.5578 -2.8595 1.6719 20 6 4.0768 -2.4337 0.4603 21 1 -0.4850 0.8401 -0.0041 22 1 3.2655 -1.9794 -2.1812 23 1 3.5310 -0.2188 -2.1023 24 1 5.5741 -1.3405 -2.9301 25 1 5.8786 -0.6464 -1.3150 26 1 6.2312 -3.3310 -1.8609 27 1 6.4316 -4.8251 0.0338 28 1 5.5062 -5.5736 2.1873 29 1 3.9926 -4.0185 4.2545 30 1 2.7511 -2.3100 2.1343 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259555935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:44 Heat of formation + Delta-G solvation = -44.714584 kcal Electronic energy + Delta-G solvation = -14711.462572 eV Core-core repulsion = 12277.200309 eV Total energy + Delta-G solvation = -2434.262262 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01113 -38.74290 -36.12930 -35.41905 -33.52142 -30.90157 -29.87316 -27.64167 -24.42881 -23.81155 -22.90162 -20.63494 -19.10749 -18.54964 -18.25231 -17.10286 -16.47619 -15.99272 -15.43807 -15.01711 -14.76309 -14.54505 -14.32399 -13.77455 -13.60490 -13.27162 -12.94600 -12.73394 -12.48539 -12.27240 -11.82265 -11.48753 -11.12431 -10.99353 -10.73726 -10.53956 -9.50706 -8.28342 -8.06819 -6.30866 0.60716 0.66257 1.31892 1.36864 1.45750 2.33977 2.71454 2.91712 3.06955 3.56491 4.07516 4.16534 4.29856 4.40181 4.47250 4.62627 4.72540 4.78471 4.91831 5.05798 5.24317 5.30586 5.40858 5.47010 5.66365 5.71045 5.83546 6.00467 6.35443 6.44902 6.74775 7.04760 7.14324 7.32060 8.88911 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.026987 B = 0.011870 C = 0.008994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.283956 B = 2358.359099 C = 3112.474643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.253 1.253 5 H -0.290 1.290 6 H -0.250 1.250 7 C -0.503 4.503 8 H 0.023 0.977 9 C 0.047 3.953 10 H 0.039 0.961 11 C -0.129 4.129 12 C 0.126 3.874 13 N -0.744 5.744 14 C 0.190 3.810 15 C -0.175 4.175 16 C -0.110 4.110 17 C 0.029 3.971 18 O -0.512 6.512 19 C -0.110 4.110 20 C -0.127 4.127 21 H 0.265 0.735 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.107 0.893 25 H 0.057 0.943 26 H 0.413 0.587 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.397 0.603 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.776 -4.184 -0.560 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.177 1.177 5 H -0.216 1.216 6 H -0.175 1.175 7 C -0.541 4.541 8 H 0.041 0.959 9 C 0.028 3.972 10 H 0.057 0.943 11 C -0.168 4.168 12 C 0.001 3.999 13 N -0.378 5.378 14 C 0.088 3.912 15 C -0.197 4.197 16 C -0.129 4.129 17 C -0.017 4.017 18 O -0.323 6.323 19 C -0.129 4.129 20 C -0.131 4.131 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.250 0.750 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.253 0.747 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.188 -4.214 -0.981 15.792 hybrid contribution -0.340 0.899 0.385 1.036 sum 14.848 -3.315 -0.596 15.225 Atomic orbital electron populations 1.70083 1.08340 1.28021 1.52640 1.25921 0.95398 1.02922 0.94221 0.85827 0.79093 0.78591 0.80131 1.17712 1.21628 1.17456 1.21107 0.91522 0.92891 1.48532 0.95896 1.18049 0.93651 0.92437 0.93035 0.94329 1.22056 0.96273 1.00894 0.97544 1.21649 0.93931 0.84191 1.00125 1.44562 1.55332 1.17693 1.20191 1.17849 0.91838 0.94022 0.87514 1.20786 1.03714 0.98331 0.96901 1.21261 0.95044 1.00231 0.96383 1.18354 0.97919 0.95781 0.89634 1.84823 1.61925 1.71059 1.14503 1.21271 0.99129 0.96180 0.96327 1.19652 0.96656 1.00395 0.96419 0.92572 0.93637 0.92181 0.87471 0.92465 0.75012 0.82716 0.83187 0.74672 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 2 C 0.01 0.71 5.47 84.65 0.46 1.17 16 3 Si 0.94 43.79 26.44 68.60 1.81 45.60 16 4 H -0.25 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.25 -10.98 6.38 99.48 0.63 -10.34 16 7 C -0.50 -29.28 7.54 25.60 0.19 -29.09 16 8 H 0.02 1.53 7.81 -2.91 -0.02 1.50 16 9 C 0.05 2.22 1.85 -12.37 -0.02 2.20 16 10 H 0.04 1.85 5.41 -2.39 -0.01 1.83 16 11 C -0.13 -5.16 5.27 30.69 0.16 -5.00 16 12 C 0.13 3.62 7.11 86.44 0.61 4.24 16 13 N -0.74 -20.97 5.81 -337.48 -1.96 -22.93 16 14 C 0.19 6.65 6.48 38.08 0.25 6.90 16 15 C -0.18 -5.08 9.87 22.41 0.22 -4.86 16 16 C -0.11 -3.34 9.99 22.33 0.22 -3.12 16 17 C 0.03 1.07 6.70 22.46 0.15 1.22 16 18 O -0.51 -17.18 13.50 -93.57 -1.26 -18.44 16 19 C -0.11 -4.90 8.87 22.41 0.20 -4.70 16 20 C -0.13 -5.54 5.46 -19.75 -0.11 -5.65 16 21 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 22 H 0.04 1.97 8.12 -2.39 -0.02 1.95 16 23 H 0.06 2.38 7.22 -2.39 -0.02 2.36 16 24 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.41 8.50 8.86 -92.71 -0.82 7.68 16 27 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 28 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 29 H 0.40 8.94 9.07 -74.05 -0.67 8.27 16 30 H 0.10 5.01 7.25 -2.91 -0.02 4.99 16 Total: -1.00 -72.45 249.36 0.84 -71.61 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.39 Total: 20.80 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 2.34 Total: -36.69 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.66 Total: -82.88 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.26 Total: -18.44 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.81 Total: 45.60 kcal Total: -72.45 0.84 -71.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259555935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.899 kcal (2) G-P(sol) polarization free energy of solvation -72.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds