Wall clock time and date at job start Mon Mar 30 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00159 * 2 1 4 4 H 1.48507 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47296 * 299.99335 * 3 2 1 6 6 H 1.48496 * 109.47404 * 59.99680 * 3 2 1 7 7 C 1.37882 * 119.99496 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99355 * 186.06930 * 7 2 1 9 9 C 1.50695 * 120.00215 * 6.07104 * 7 2 1 10 10 H 1.08997 * 109.26471 * 335.04039 * 9 7 2 11 11 C 1.52848 * 109.26770 * 94.54473 * 9 7 2 12 12 C 1.53428 * 108.84948 * 171.62691 * 11 9 7 13 13 N 1.46928 * 107.78083 * 296.73618 * 12 11 9 14 14 C 1.40203 * 118.89671 * 44.61006 * 13 12 11 15 15 C 1.39035 * 119.08052 * 166.69852 * 14 13 12 16 16 C 1.38022 * 120.11212 * 179.81237 * 15 14 13 17 17 C 1.38721 * 119.84882 * 0.02562 * 16 15 14 18 18 O 1.36003 * 119.97973 * 180.08647 * 17 16 15 19 19 C 1.38530 * 120.04552 * 0.05805 * 17 16 15 20 20 C 1.38517 * 120.26920 * 0.02617 * 19 17 16 21 21 H 0.97000 * 119.99696 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.57662 * 291.44050 * 11 9 7 23 23 H 1.09003 * 109.57501 * 51.69325 * 11 9 7 24 24 H 1.09005 * 109.79887 * 56.30054 * 12 11 9 25 25 H 1.09002 * 109.80094 * 177.10563 * 12 11 9 26 26 H 0.96999 * 120.54743 * 224.63362 * 13 12 11 27 27 H 1.07999 * 119.94370 * 359.83645 * 15 14 13 28 28 H 1.07994 * 120.07679 * 180.02562 * 16 15 14 29 29 H 0.96692 * 114.00425 * 89.99146 * 18 17 16 30 30 H 1.07999 * 119.86674 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0800 -1.1967 0.0994 9 6 1.2573 -2.4956 -0.1369 10 1 0.2336 -2.3612 0.2125 11 6 1.2377 -2.9131 -1.6071 12 6 0.6637 -4.3321 -1.7119 13 7 1.5740 -5.2381 -0.9981 14 6 2.0658 -4.8537 0.2572 15 6 2.6918 -5.8029 1.0573 16 6 3.1874 -5.4469 2.2953 17 6 3.0590 -4.1393 2.7404 18 8 3.5479 -3.7852 3.9591 19 6 2.4337 -3.1938 1.9441 20 6 1.9336 -3.5478 0.7018 21 1 -0.4850 0.8401 -0.0004 22 1 0.6125 -2.2234 -2.1743 23 1 2.2525 -2.8974 -2.0048 24 1 -0.3247 -4.3653 -1.2534 25 1 0.5948 -4.6262 -2.7592 26 1 1.8306 -6.0878 -1.3892 27 1 2.7909 -6.8205 0.7093 28 1 3.6739 -6.1846 2.9161 29 1 4.4654 -3.4807 3.9415 30 1 2.3357 -2.1765 2.2933 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259555937.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:48 Heat of formation + Delta-G solvation = -25.207882 kcal Electronic energy + Delta-G solvation = -14665.437409 eV Core-core repulsion = 12232.021020 eV Total energy + Delta-G solvation = -2433.416388 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.39994 -37.20895 -34.50645 -33.66830 -31.32686 -29.27646 -28.09972 -25.61831 -22.91879 -22.15724 -21.38945 -19.03523 -17.04221 -16.79968 -16.33668 -15.53510 -14.85720 -14.42466 -13.84625 -13.29725 -13.05880 -12.61989 -12.32824 -12.21889 -12.00391 -11.36426 -11.30395 -10.97706 -10.59719 -10.45075 -10.23865 -9.75571 -9.27995 -9.12203 -8.89277 -8.55714 -7.85316 -6.57707 -6.06467 -4.09489 2.19327 2.20644 3.26866 3.35705 3.39793 4.11528 4.36987 4.50904 5.01926 5.22099 5.55652 5.68090 5.78159 6.04787 6.12286 6.23476 6.30821 6.36702 6.69731 6.85980 6.93834 6.98411 7.23480 7.25988 7.41506 7.67690 7.78562 7.88019 7.97230 8.31716 8.37931 8.45507 8.99109 9.53422 11.01446 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.011566 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.198417 B = 2420.362095 C = 3315.623308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.505 4.505 8 H 0.056 0.944 9 C 0.069 3.931 10 H 0.072 0.928 11 C -0.119 4.119 12 C 0.120 3.880 13 N -0.756 5.756 14 C 0.191 3.809 15 C -0.190 4.190 16 C -0.126 4.126 17 C 0.032 3.968 18 O -0.504 6.504 19 C -0.083 4.083 20 C -0.089 4.089 21 H 0.262 0.738 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.390 0.610 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.373 0.627 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.166 -8.260 -0.557 9.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.051 3.949 10 H 0.090 0.910 11 C -0.158 4.158 12 C -0.004 4.004 13 N -0.388 5.388 14 C 0.090 3.910 15 C -0.213 4.213 16 C -0.145 4.145 17 C -0.014 4.014 18 O -0.312 6.312 19 C -0.102 4.102 20 C -0.094 4.094 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.223 0.777 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.226 0.774 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.302 -8.138 -0.442 8.794 hybrid contribution 1.055 0.711 -0.332 1.314 sum 4.356 -7.428 -0.774 8.646 Atomic orbital electron populations 1.69920 1.05938 1.26669 1.50437 1.24989 0.94838 0.99213 0.94700 0.86570 0.80269 0.83777 0.77639 1.19679 1.20969 1.20978 1.21038 0.93314 0.89774 1.50154 0.92549 1.17820 0.97884 0.90402 0.88813 0.91033 1.22001 0.99822 0.92952 1.01033 1.21667 0.92420 0.91738 0.94620 1.44638 1.53536 1.22114 1.18501 1.17809 0.94673 0.92620 0.85944 1.20329 1.07573 0.98001 0.95376 1.20842 1.02164 0.95804 0.95680 1.18309 1.03838 0.92612 0.86595 1.84858 1.32009 1.86981 1.27307 1.21362 0.96651 0.99546 0.92635 1.20162 1.00972 0.92313 0.95910 0.92851 0.91592 0.93109 0.93188 0.92071 0.77661 0.87143 0.86923 0.77361 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 12.76 55.43 0.71 -24.46 16 2 C 0.06 1.75 5.45 -17.82 -0.10 1.65 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -13.44 6.87 -34.44 -0.24 -13.68 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.07 1.70 2.41 -93.05 -0.22 1.47 16 10 H 0.07 1.98 7.22 -51.93 -0.37 1.60 16 11 C -0.12 -2.56 5.37 -26.59 -0.14 -2.70 16 12 C 0.12 2.10 7.11 -3.59 -0.03 2.07 16 13 N -0.76 -12.85 5.81 -58.02 -0.34 -13.19 16 14 C 0.19 3.74 6.48 -83.61 -0.54 3.20 16 15 C -0.19 -3.31 9.87 -39.37 -0.39 -3.70 16 16 C -0.13 -2.21 9.99 -39.48 -0.39 -2.60 16 17 C 0.03 0.62 6.70 -39.30 -0.26 0.36 16 18 O -0.50 -8.80 13.50 -19.75 -0.27 -9.07 16 19 C -0.08 -1.83 9.02 -39.37 -0.36 -2.18 16 20 C -0.09 -2.01 5.47 -104.44 -0.57 -2.58 16 21 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 22 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 23 H 0.05 1.10 8.12 -51.93 -0.42 0.68 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.39 5.38 8.86 -40.82 -0.36 5.01 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.37 4.68 9.06 45.56 0.41 5.10 16 30 H 0.13 3.15 7.24 -52.49 -0.38 2.77 16 LS Contribution 254.83 15.07 3.84 3.84 Total: -1.00 -29.60 254.83 -7.10 -36.70 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -2.78 Total: 8.97 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -3.24 Total: -18.70 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.37 Total: -37.65 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.27 Total: -9.07 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.60 -7.10 -36.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259555937.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.490 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds