Wall clock time and date at job start Mon Mar 30 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00159 * 2 1 4 4 H 1.48507 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47296 * 299.99335 * 3 2 1 6 6 H 1.48496 * 109.47404 * 59.99680 * 3 2 1 7 7 C 1.37882 * 119.99496 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99355 * 186.06930 * 7 2 1 9 9 C 1.50695 * 120.00215 * 6.07104 * 7 2 1 10 10 H 1.08997 * 109.26471 * 335.04039 * 9 7 2 11 11 C 1.52848 * 109.26770 * 94.54473 * 9 7 2 12 12 C 1.53428 * 108.84948 * 171.62691 * 11 9 7 13 13 N 1.46928 * 107.78083 * 296.73618 * 12 11 9 14 14 C 1.40203 * 118.89671 * 44.61006 * 13 12 11 15 15 C 1.39035 * 119.08052 * 166.69852 * 14 13 12 16 16 C 1.38022 * 120.11212 * 179.81237 * 15 14 13 17 17 C 1.38721 * 119.84882 * 0.02562 * 16 15 14 18 18 O 1.36003 * 119.97973 * 180.08647 * 17 16 15 19 19 C 1.38530 * 120.04552 * 0.05805 * 17 16 15 20 20 C 1.38517 * 120.26920 * 0.02617 * 19 17 16 21 21 H 0.97000 * 119.99696 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.57662 * 291.44050 * 11 9 7 23 23 H 1.09003 * 109.57501 * 51.69325 * 11 9 7 24 24 H 1.09005 * 109.79887 * 56.30054 * 12 11 9 25 25 H 1.09002 * 109.80094 * 177.10563 * 12 11 9 26 26 H 0.96999 * 120.54743 * 224.63362 * 13 12 11 27 27 H 1.07999 * 119.94370 * 359.83645 * 15 14 13 28 28 H 1.07994 * 120.07679 * 180.02562 * 16 15 14 29 29 H 0.96692 * 114.00425 * 89.99146 * 18 17 16 30 30 H 1.07999 * 119.86674 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0800 -1.1967 0.0994 9 6 1.2573 -2.4956 -0.1369 10 1 0.2336 -2.3612 0.2125 11 6 1.2377 -2.9131 -1.6071 12 6 0.6637 -4.3321 -1.7119 13 7 1.5740 -5.2381 -0.9981 14 6 2.0658 -4.8537 0.2572 15 6 2.6918 -5.8029 1.0573 16 6 3.1874 -5.4469 2.2953 17 6 3.0590 -4.1393 2.7404 18 8 3.5479 -3.7852 3.9591 19 6 2.4337 -3.1938 1.9441 20 6 1.9336 -3.5478 0.7018 21 1 -0.4850 0.8401 -0.0004 22 1 0.6125 -2.2234 -2.1743 23 1 2.2525 -2.8974 -2.0048 24 1 -0.3247 -4.3653 -1.2534 25 1 0.5948 -4.6262 -2.7592 26 1 1.8306 -6.0878 -1.3892 27 1 2.7909 -6.8205 0.7093 28 1 3.6739 -6.1846 2.9161 29 1 4.4654 -3.4807 3.9415 30 1 2.3357 -2.1765 2.2933 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259555937.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:48 Heat of formation + Delta-G solvation = -46.232237 kcal Electronic energy + Delta-G solvation = -14666.349093 eV Core-core repulsion = 12232.021020 eV Total energy + Delta-G solvation = -2434.328073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.92665 -38.67543 -36.06413 -35.41450 -33.19211 -30.79971 -29.68481 -27.49543 -24.58992 -23.71621 -23.00641 -20.60753 -18.57875 -18.49179 -18.15772 -17.02032 -16.59656 -16.10082 -15.34202 -14.85895 -14.63163 -14.31383 -14.13265 -13.70013 -13.54819 -13.15020 -12.87960 -12.79281 -12.42097 -12.23246 -11.92756 -11.46145 -11.03340 -10.85766 -10.61047 -10.49104 -9.46860 -8.18695 -7.99067 -6.22556 0.66871 0.70526 1.37215 1.39607 1.50885 2.40724 2.75092 2.98391 3.14802 3.62131 4.14732 4.24512 4.40423 4.47010 4.56572 4.70868 4.79106 4.84958 5.10522 5.20703 5.36532 5.41895 5.53472 5.65593 5.69659 5.80896 5.89495 6.12112 6.36317 6.49651 6.90257 7.06253 7.18733 7.42314 8.93794 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.011566 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.198417 B = 2420.362095 C = 3315.623308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.510 4.510 8 H 0.045 0.955 9 C 0.068 3.932 10 H 0.027 0.973 11 C -0.113 4.113 12 C 0.129 3.871 13 N -0.744 5.744 14 C 0.183 3.817 15 C -0.176 4.176 16 C -0.114 4.114 17 C 0.030 3.970 18 O -0.511 6.511 19 C -0.109 4.109 20 C -0.125 4.125 21 H 0.262 0.738 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.103 0.897 26 H 0.411 0.589 27 H 0.153 0.847 28 H 0.149 0.851 29 H 0.396 0.604 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.562 -10.569 -0.870 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.049 3.951 10 H 0.045 0.955 11 C -0.152 4.152 12 C 0.004 3.996 13 N -0.378 5.378 14 C 0.081 3.919 15 C -0.198 4.198 16 C -0.133 4.133 17 C -0.016 4.016 18 O -0.322 6.322 19 C -0.129 4.129 20 C -0.129 4.129 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.121 0.879 26 H 0.248 0.752 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.252 0.748 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.727 -10.470 -0.768 11.513 hybrid contribution 0.669 1.365 -0.154 1.528 sum 5.396 -9.105 -0.922 10.624 Atomic orbital electron populations 1.70047 1.07263 1.27303 1.51952 1.25713 0.95593 1.02372 0.94749 0.85615 0.79146 0.79910 0.77697 1.19184 1.20255 1.20816 1.21269 0.92897 0.91345 1.49339 0.93629 1.17678 0.95390 0.90882 0.91141 0.95502 1.21809 0.99431 0.95559 0.98411 1.21554 0.91669 0.89306 0.97062 1.44528 1.52923 1.22746 1.17570 1.17920 0.94896 0.91829 0.87228 1.20748 1.05244 0.99203 0.94622 1.21221 1.00896 0.95228 0.95974 1.18347 1.03584 0.93066 0.86615 1.84789 1.33938 1.87109 1.26349 1.21242 0.98961 0.98918 0.93739 1.20007 1.03146 0.93522 0.96255 0.92891 0.93429 0.93573 0.93998 0.87853 0.75172 0.82968 0.83290 0.74787 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 12.76 21.45 0.27 -54.47 16 2 C 0.01 0.79 5.45 84.66 0.46 1.25 16 3 Si 0.95 44.28 29.54 68.60 2.03 46.30 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.51 -28.49 6.87 25.60 0.18 -28.32 16 8 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 9 C 0.07 3.48 2.41 -12.37 -0.03 3.45 16 10 H 0.03 1.60 7.22 -2.39 -0.02 1.58 16 11 C -0.11 -4.94 5.37 30.69 0.16 -4.78 16 12 C 0.13 4.30 7.11 86.44 0.61 4.92 16 13 N -0.74 -23.14 5.81 -337.48 -1.96 -25.10 16 14 C 0.18 6.84 6.48 38.07 0.25 7.09 16 15 C -0.18 -5.40 9.87 22.41 0.22 -5.18 16 16 C -0.11 -3.59 9.99 22.33 0.22 -3.36 16 17 C 0.03 1.12 6.70 22.46 0.15 1.27 16 18 O -0.51 -17.12 13.50 -93.59 -1.26 -18.38 16 19 C -0.11 -4.97 9.02 22.41 0.20 -4.77 16 20 C -0.12 -5.73 5.47 -19.75 -0.11 -5.84 16 21 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 22 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.05 2.01 8.12 -2.39 -0.02 2.00 16 24 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.41 9.48 8.86 -92.71 -0.82 8.66 16 27 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 28 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.40 9.24 9.06 -74.06 -0.67 8.57 16 30 H 0.10 5.08 7.24 -2.91 -0.02 5.06 16 Total: -1.00 -66.92 254.83 1.07 -65.85 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.33 Total: 20.09 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 2.32 Total: -34.28 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.69 Total: -79.57 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -1.26 Total: -18.38 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.92 1.07 -65.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259555937.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.618 kcal (2) G-P(sol) polarization free energy of solvation -66.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds