Wall clock time and date at job start Mon Mar 30 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00415 * 2 1 4 4 H 1.48499 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46708 * 299.99612 * 3 2 1 6 6 H 1.48495 * 109.47324 * 59.99086 * 3 2 1 7 7 C 1.37877 * 119.99429 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00355 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47392 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47392 * 179.97438 * 10 9 7 12 12 O 1.20757 * 119.99665 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.50707 * 109.46939 * 180.02562 * 13 11 10 15 15 C 1.38227 * 119.62059 * 125.01917 * 14 13 11 16 16 C 1.38627 * 119.15702 * 179.74122 * 15 14 13 17 17 C 1.38669 * 118.42389 * 0.47826 * 16 15 14 18 18 C 1.38186 * 119.16143 * 359.49762 * 17 16 15 19 19 N 1.31856 * 119.61137 * 304.99347 * 14 13 11 20 20 H 0.97000 * 119.99643 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47149 * 59.99693 * 9 7 2 22 22 H 1.08997 * 109.46951 * 299.99502 * 9 7 2 23 23 H 1.09007 * 109.47189 * 59.99471 * 10 9 7 24 24 H 1.09011 * 109.46851 * 300.00065 * 10 9 7 25 25 H 1.08995 * 109.47643 * 59.99877 * 13 11 10 26 26 H 1.08999 * 109.47131 * 299.99391 * 13 11 10 27 27 H 1.07998 * 120.41916 * 359.95342 * 15 14 13 28 28 H 1.08008 * 120.78688 * 180.22921 * 16 15 14 29 29 H 1.08002 * 120.42244 * 179.78279 * 17 16 15 30 30 H 1.07996 * 119.61757 * 180.25243 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2123 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4915 -4.9672 0.0012 12 8 0.2839 -4.9671 0.0020 13 6 2.2450 -6.2724 0.0019 14 6 1.2656 -7.4178 0.0018 15 6 1.3461 -8.3854 -0.9820 16 6 0.4437 -9.4378 -0.9698 17 6 -0.5165 -9.4723 0.0301 18 6 -0.5353 -8.4693 0.9805 19 7 0.3421 -7.4855 0.9405 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6044 0.8905 24 1 2.8717 -3.6044 -0.8895 25 1 2.8716 -6.3297 0.8918 26 1 2.8716 -6.3306 -0.8881 27 1 2.1045 -8.3243 -1.7484 28 1 0.4851 -10.2102 -1.7235 29 1 -1.2376 -10.2753 0.0683 30 1 -1.2773 -8.4911 1.7649 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259669379.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:54 Heat of formation + Delta-G solvation = -15.945332 kcal Electronic energy + Delta-G solvation = -13713.985322 eV Core-core repulsion = 11280.970588 eV Total energy + Delta-G solvation = -2433.014734 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28325 -38.49941 -33.44368 -32.95148 -32.29107 -31.01308 -28.47188 -25.52895 -23.52388 -22.68248 -21.06755 -18.72071 -16.83581 -16.54493 -16.17200 -15.53284 -15.14679 -14.59086 -14.46294 -13.90598 -13.56883 -13.13405 -12.76504 -12.54258 -12.16388 -11.66406 -11.56415 -11.07186 -10.92383 -10.55855 -9.91902 -9.85979 -9.66620 -9.38614 -9.11915 -9.06767 -8.55853 -8.30827 -5.94242 -3.98402 1.11150 1.31503 2.71615 3.33949 3.40961 3.44489 3.81036 4.31193 4.45678 4.58212 4.81673 4.85764 5.05423 5.13964 5.40777 5.41629 5.50871 5.67863 5.72512 6.07947 6.10603 6.15189 6.30626 6.38194 6.71077 7.03429 7.75766 7.87571 8.08149 8.10750 8.25348 8.46895 9.10156 9.65300 11.16853 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.073898 B = 0.004988 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.810184 B = 5612.144896 C = 5812.747896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.159 4.159 11 C 0.353 3.647 12 O -0.435 6.435 13 C -0.129 4.129 14 C 0.143 3.857 15 C -0.172 4.172 16 C -0.078 4.078 17 C -0.184 4.184 18 C 0.104 3.896 19 N -0.461 5.461 20 H 0.260 0.740 21 H 0.020 0.980 22 H 0.022 0.978 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -18.480 -1.270 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.196 4.196 11 C 0.226 3.774 12 O -0.306 6.306 13 C -0.167 4.167 14 C 0.005 3.995 15 C -0.192 4.192 16 C -0.104 4.104 17 C -0.204 4.204 18 C -0.053 4.053 19 N -0.170 5.170 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.040 0.960 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.134 -17.710 -0.631 17.996 hybrid contribution 0.502 0.189 -0.694 0.877 sum 3.636 -17.520 -1.325 17.942 Atomic orbital electron populations 1.70012 1.06088 1.26436 1.50466 1.25041 0.94816 0.99265 0.95342 0.86538 0.80037 0.83852 0.77566 1.19716 1.21044 1.21022 1.21281 0.92991 0.91040 1.51023 0.92514 1.18941 0.93408 0.90040 0.98315 1.22198 1.01042 0.93707 1.02659 1.24704 0.90069 0.91295 0.71379 1.90389 1.16764 1.89524 1.33917 1.21299 0.97702 0.92429 1.05298 1.20958 0.93626 0.94215 0.90656 1.21960 1.01189 0.95896 1.00178 1.21513 0.93876 0.97486 0.97524 1.22112 1.00337 1.01037 0.96870 1.22771 0.96021 0.89209 0.97346 1.67493 1.02788 1.22410 1.24266 0.93042 0.96145 0.95963 0.89812 0.89907 0.86964 0.87382 0.84857 0.85054 0.85062 0.82904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.85 13.29 55.43 0.74 -27.12 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 10 C -0.16 -3.22 5.57 -27.88 -0.16 -3.38 16 11 C 0.35 6.72 7.09 -29.04 -0.21 6.51 16 12 O -0.43 -10.22 14.96 6.00 0.09 -10.13 16 13 C -0.13 -1.77 6.04 -29.03 -0.18 -1.95 16 14 C 0.14 2.13 5.76 -82.58 -0.48 1.65 16 15 C -0.17 -2.04 9.71 -39.44 -0.38 -2.43 16 16 C -0.08 -0.81 10.18 -39.28 -0.40 -1.21 16 17 C -0.18 -1.97 10.11 -39.44 -0.40 -2.37 16 18 C 0.10 1.39 11.18 -17.55 -0.20 1.19 16 19 N -0.46 -7.67 9.23 -9.47 -0.09 -7.76 16 20 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 21 H 0.02 0.60 8.10 -51.93 -0.42 0.18 16 22 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 23 H 0.08 1.56 8.14 -51.92 -0.42 1.14 16 24 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 25 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.11 1.11 7.87 -51.93 -0.41 0.70 16 27 H 0.13 1.20 7.95 -52.49 -0.42 0.78 16 28 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 269.48 15.07 4.06 4.06 Total: -1.00 -35.60 269.48 -6.89 -42.48 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -3.75 Total: -3.28 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -2.92 Total: -15.13 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.65 Total: -34.87 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -35.60 -6.89 -42.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259669379.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.538 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds