Wall clock time and date at job start Mon Mar 30 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00415 * 2 1 4 4 H 1.48499 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46708 * 299.99612 * 3 2 1 6 6 H 1.48495 * 109.47324 * 59.99086 * 3 2 1 7 7 C 1.37877 * 119.99429 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99676 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00355 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47392 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47392 * 179.97438 * 10 9 7 12 12 O 1.20757 * 119.99665 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.50707 * 109.46939 * 180.02562 * 13 11 10 15 15 C 1.38227 * 119.62059 * 125.01917 * 14 13 11 16 16 C 1.38627 * 119.15702 * 179.74122 * 15 14 13 17 17 C 1.38669 * 118.42389 * 0.47826 * 16 15 14 18 18 C 1.38186 * 119.16143 * 359.49762 * 17 16 15 19 19 N 1.31856 * 119.61137 * 304.99347 * 14 13 11 20 20 H 0.97000 * 119.99643 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47149 * 59.99693 * 9 7 2 22 22 H 1.08997 * 109.46951 * 299.99502 * 9 7 2 23 23 H 1.09007 * 109.47189 * 59.99471 * 10 9 7 24 24 H 1.09011 * 109.46851 * 300.00065 * 10 9 7 25 25 H 1.08995 * 109.47643 * 59.99877 * 13 11 10 26 26 H 1.08999 * 109.47131 * 299.99391 * 13 11 10 27 27 H 1.07998 * 120.41916 * 359.95342 * 15 14 13 28 28 H 1.08008 * 120.78688 * 180.22921 * 16 15 14 29 29 H 1.08002 * 120.42244 * 179.78279 * 17 16 15 30 30 H 1.07996 * 119.61757 * 180.25243 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2123 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4915 -4.9672 0.0012 12 8 0.2839 -4.9671 0.0020 13 6 2.2450 -6.2724 0.0019 14 6 1.2656 -7.4178 0.0018 15 6 1.3461 -8.3854 -0.9820 16 6 0.4437 -9.4378 -0.9698 17 6 -0.5165 -9.4723 0.0301 18 6 -0.5353 -8.4693 0.9805 19 7 0.3421 -7.4855 0.9405 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6044 0.8905 24 1 2.8717 -3.6044 -0.8895 25 1 2.8716 -6.3297 0.8918 26 1 2.8716 -6.3306 -0.8881 27 1 2.1045 -8.3243 -1.7484 28 1 0.4851 -10.2102 -1.7235 29 1 -1.2376 -10.2753 0.0683 30 1 -1.2773 -8.4911 1.7649 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259669379.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:54 Heat of formation + Delta-G solvation = -39.851317 kcal Electronic energy + Delta-G solvation = -13715.021963 eV Core-core repulsion = 11280.970588 eV Total energy + Delta-G solvation = -2434.051375 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.31532 -39.96179 -35.57900 -33.99352 -33.25887 -32.93193 -29.74583 -27.40953 -24.46804 -24.13737 -22.59933 -20.25709 -18.59826 -17.72948 -17.28462 -16.70055 -16.55064 -16.34609 -16.12154 -15.30268 -14.69806 -14.29446 -14.18058 -14.01185 -13.72653 -13.13759 -12.92448 -12.79930 -12.55235 -12.41645 -11.89041 -11.63949 -11.29208 -10.75946 -10.58899 -10.53227 -10.17760 -9.79606 -8.19255 -6.33608 0.20411 0.45296 1.24226 1.41220 1.42889 1.56415 2.41226 2.83855 3.13674 3.37397 3.38270 3.86498 4.05717 4.26581 4.29374 4.41215 4.52607 4.54773 4.69093 4.73257 4.84245 4.94435 5.24156 5.25562 5.30261 5.48634 5.63076 5.84074 5.86054 6.17483 6.80334 6.89861 7.17235 7.37121 8.93699 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.073898 B = 0.004988 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.810184 B = 5612.144896 C = 5812.747896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.034 3.966 10 C -0.153 4.153 11 C 0.355 3.645 12 O -0.492 6.492 13 C -0.115 4.115 14 C 0.107 3.893 15 C -0.171 4.171 16 C -0.079 4.079 17 C -0.176 4.176 18 C 0.074 3.926 19 N -0.512 5.512 20 H 0.262 0.738 21 H -0.021 1.021 22 H -0.024 1.024 23 H 0.106 0.894 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.151 0.849 27 H 0.165 0.835 28 H 0.170 0.830 29 H 0.164 0.836 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 -19.714 -2.303 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.095 0.905 9 C -0.003 4.003 10 C -0.190 4.190 11 C 0.232 3.768 12 O -0.367 6.367 13 C -0.153 4.153 14 C -0.030 4.030 15 C -0.191 4.191 16 C -0.105 4.105 17 C -0.196 4.196 18 C -0.082 4.082 19 N -0.222 5.222 20 H 0.071 0.929 21 H -0.002 1.002 22 H -0.006 1.006 23 H 0.124 0.876 24 H 0.131 0.869 25 H 0.151 0.849 26 H 0.169 0.831 27 H 0.183 0.817 28 H 0.187 0.813 29 H 0.182 0.818 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.666 -18.966 -1.663 19.864 hybrid contribution -0.336 0.505 -0.376 0.714 sum 5.330 -18.461 -2.039 19.323 Atomic orbital electron populations 1.70195 1.08427 1.27731 1.51761 1.26181 0.95719 1.04099 0.94625 0.85252 0.79357 0.77955 0.77556 1.17455 1.20534 1.20691 1.21793 0.94060 0.91694 1.50433 0.90512 1.18764 0.94019 0.93373 0.94183 1.22105 0.99763 0.92058 1.05097 1.25153 0.89381 0.93128 0.69174 1.90383 1.19203 1.90375 1.36767 1.21263 0.97292 0.88484 1.08224 1.21237 0.94214 0.95700 0.91858 1.22329 1.01923 0.95215 0.99611 1.22034 0.92821 0.97804 0.97833 1.22482 1.00672 1.00668 0.95739 1.23109 0.96319 0.89856 0.98959 1.67392 1.04387 1.24220 1.26190 0.92900 1.00247 1.00558 0.87604 0.86942 0.84905 0.83101 0.81721 0.81274 0.81842 0.82114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.94 13.29 21.45 0.28 -60.65 16 2 C -0.01 -0.55 5.46 84.65 0.46 -0.09 16 3 Si 0.98 44.96 29.54 68.60 2.03 46.98 16 4 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.54 -31.47 9.11 25.60 0.23 -31.23 16 8 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 9 C 0.03 1.92 4.26 29.85 0.13 2.05 16 10 C -0.15 -6.16 5.57 29.85 0.17 -5.99 16 11 C 0.35 13.58 7.09 29.10 0.21 13.79 16 12 O -0.49 -24.34 14.96 -1.44 -0.02 -24.36 16 13 C -0.12 -2.93 6.04 29.10 0.18 -2.75 16 14 C 0.11 3.07 5.76 42.55 0.25 3.31 16 15 C -0.17 -3.57 9.71 22.36 0.22 -3.35 16 16 C -0.08 -1.40 10.18 22.47 0.23 -1.17 16 17 C -0.18 -3.43 10.11 22.36 0.23 -3.21 16 18 C 0.07 1.99 11.18 84.67 0.95 2.94 16 19 N -0.51 -17.33 9.23 -183.88 -1.70 -19.03 16 20 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 21 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 22 H -0.02 -1.56 8.10 -2.39 -0.02 -1.58 16 23 H 0.11 3.79 8.14 -2.38 -0.02 3.77 16 24 H 0.11 3.85 8.14 -2.38 -0.02 3.83 16 25 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 26 H 0.15 2.47 7.87 -2.39 -0.02 2.45 16 27 H 0.17 2.24 7.95 -2.91 -0.02 2.21 16 28 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -83.13 269.48 4.95 -78.18 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.12 Total: 4.57 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 3.24 Total: -25.70 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.41 Total: -79.68 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.02 Total: -24.36 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -83.13 4.95 -78.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259669379.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.332 kcal (2) G-P(sol) polarization free energy of solvation -83.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds