Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99933 * 2 1 4 4 H 1.48499 * 109.47422 * 264.78915 * 3 2 1 5 5 H 1.48509 * 109.47088 * 24.79153 * 3 2 1 6 6 H 1.48506 * 109.47075 * 144.79087 * 3 2 1 7 7 C 1.37875 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99834 * 4.63680 * 7 2 1 9 9 C 1.50698 * 119.99772 * 184.63918 * 7 2 1 10 10 H 1.08997 * 109.40348 * 335.37375 * 9 7 2 11 11 C 1.53039 * 109.43536 * 95.26653 * 9 7 2 12 12 C 1.53381 * 107.94026 * 167.44683 * 11 9 7 13 13 N 1.46435 * 108.64153 * 291.78000 * 12 11 9 14 14 C 1.39695 * 113.10318 * 53.31427 * 13 12 11 15 15 C 1.40038 * 117.66248 * 159.86769 * 14 13 12 16 16 O 1.36013 * 119.83058 * 359.72631 * 15 14 13 17 17 C 1.38183 * 120.33661 * 179.69741 * 15 14 13 18 18 C 1.38334 * 119.88829 * 359.97074 * 17 15 14 19 19 C 1.37992 * 119.92305 * 0.13959 * 18 17 15 20 20 C 1.38175 * 122.96217 * 339.79440 * 14 13 12 21 21 H 0.96998 * 119.99893 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.76774 * 47.83766 * 11 9 7 23 23 H 1.08994 * 109.76483 * 287.05693 * 11 9 7 24 24 H 1.08996 * 109.60925 * 51.52811 * 12 11 9 25 25 H 1.08998 * 109.61001 * 172.03513 * 12 11 9 26 26 H 1.00896 * 111.00227 * 178.84188 * 13 12 11 27 27 H 0.96701 * 114.00280 * 89.99257 * 16 15 14 28 28 H 1.08003 * 120.05696 * 179.97438 * 17 15 14 29 29 H 1.08002 * 120.03963 * 180.11204 * 18 17 15 30 30 H 1.07994 * 119.70888 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6068 1.9829 -1.3943 5 1 1.3958 2.6820 0.5871 6 1 3.4874 1.4744 0.8073 7 6 2.0046 -1.1940 -0.0005 8 1 1.4672 -2.1278 -0.0766 9 6 3.5078 -1.1962 0.1050 10 1 3.8977 -0.2454 -0.2584 11 6 3.9153 -1.3880 1.5676 12 6 5.4165 -1.7007 1.6027 13 7 5.6337 -3.0208 1.0074 14 6 5.0730 -3.1469 -0.2659 15 6 5.5636 -4.1637 -1.0945 16 8 6.5557 -4.9802 -0.6486 17 6 5.0443 -4.3421 -2.3625 18 6 4.0343 -3.5131 -2.8167 19 6 3.5502 -2.5087 -2.0037 20 6 4.0678 -2.3202 -0.7299 21 1 -0.4850 0.8400 0.0004 22 1 3.3558 -2.2173 2.0005 23 1 3.7158 -0.4751 2.1286 24 1 5.9604 -0.9481 1.0319 25 1 5.7657 -1.7032 2.6353 26 1 6.6150 -3.2550 0.9952 27 1 6.2386 -5.7728 -0.1943 28 1 5.4263 -5.1274 -2.9980 29 1 3.6254 -3.6514 -3.8067 30 1 2.7614 -1.8638 -2.3616 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259711524.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = -46.540287 kcal Electronic energy + Delta-G solvation = -14808.342585 eV Core-core repulsion = 12374.001154 eV Total energy + Delta-G solvation = -2434.341431 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34144 -38.39815 -36.92136 -35.35404 -33.27304 -31.17233 -29.62427 -27.80073 -24.31150 -23.95979 -22.74634 -20.38414 -19.12355 -18.98244 -17.76077 -17.09225 -16.46606 -16.36074 -15.44356 -15.13986 -14.95617 -14.41029 -14.31241 -13.92005 -13.35891 -13.22517 -12.87046 -12.64586 -12.44558 -12.14263 -11.81128 -11.74730 -11.18300 -11.07375 -10.94819 -10.69613 -9.34002 -8.50145 -8.29056 -6.32169 0.45877 0.58195 1.33775 1.34616 1.45104 2.33123 2.75529 3.04310 3.15132 3.45166 3.99699 4.15792 4.24232 4.32449 4.48155 4.52465 4.64135 4.70107 4.84873 5.01961 5.16577 5.24376 5.36110 5.41088 5.59348 5.65968 5.85008 5.97355 6.21495 6.33361 6.46093 6.72938 6.94725 7.31163 8.87656 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.035520 B = 0.010635 C = 0.009006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.094695 B = 2632.230631 C = 3108.223273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.498 4.498 8 H 0.027 0.973 9 C 0.047 3.953 10 H 0.039 0.961 11 C -0.114 4.114 12 C 0.061 3.939 13 N -0.627 5.627 14 C 0.088 3.912 15 C 0.049 3.951 16 O -0.496 6.496 17 C -0.127 4.127 18 C -0.146 4.146 19 C -0.101 4.101 20 C -0.109 4.109 21 H 0.266 0.734 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.107 0.893 26 H 0.371 0.629 27 H 0.401 0.599 28 H 0.152 0.848 29 H 0.143 0.857 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.527 -5.570 -0.902 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.536 4.536 8 H 0.046 0.954 9 C 0.028 3.972 10 H 0.057 0.943 11 C -0.152 4.152 12 C -0.066 4.066 13 N -0.253 5.253 14 C -0.013 4.013 15 C 0.001 3.999 16 O -0.307 6.307 17 C -0.146 4.146 18 C -0.165 4.165 19 C -0.120 4.120 20 C -0.113 4.113 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.125 0.875 26 H 0.197 0.803 27 H 0.258 0.742 28 H 0.169 0.831 29 H 0.160 0.840 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.284 -5.288 -0.731 14.316 hybrid contribution -0.361 0.856 -0.203 0.951 sum 12.923 -4.432 -0.934 13.694 Atomic orbital electron populations 1.70047 1.08161 1.28030 1.52502 1.25887 0.95419 1.02666 0.94255 0.85882 0.79569 0.78935 0.79483 1.19407 1.21275 1.16606 1.20968 0.90364 0.92759 1.49472 0.95435 1.18182 0.94101 0.92694 0.92209 0.94267 1.21867 0.94513 1.00840 0.97969 1.22123 0.96709 0.87331 1.00464 1.56436 1.20911 1.29426 1.18564 1.19071 0.96472 0.96927 0.88860 1.18249 0.93554 0.95017 0.93065 1.84706 1.30925 1.37396 1.77656 1.21333 0.96589 1.00939 0.95720 1.21100 0.98377 0.96246 1.00745 1.21176 0.98631 0.98379 0.93805 1.19966 0.97095 0.98381 0.95834 0.92506 0.93170 0.91834 0.94027 0.87512 0.80291 0.74170 0.83060 0.83959 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.69 13.96 21.45 0.30 -58.39 16 2 C 0.01 0.85 5.47 84.65 0.46 1.31 16 3 Si 0.94 43.39 26.98 68.60 1.85 45.24 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.24 -10.24 6.70 99.48 0.67 -9.57 16 7 C -0.50 -28.20 7.59 25.60 0.19 -28.01 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 C 0.05 2.20 1.91 -12.24 -0.02 2.18 16 10 H 0.04 1.84 5.28 -2.39 -0.01 1.83 16 11 C -0.11 -4.67 5.48 30.73 0.17 -4.50 16 12 C 0.06 1.94 6.61 86.52 0.57 2.51 16 13 N -0.63 -19.89 6.47 -338.56 -2.19 -22.08 16 14 C 0.09 3.21 6.24 38.31 0.24 3.45 16 15 C 0.05 1.52 6.68 22.69 0.15 1.68 16 16 O -0.50 -12.28 12.54 -93.70 -1.17 -13.46 16 17 C -0.13 -3.77 9.97 22.28 0.22 -3.55 16 18 C -0.15 -4.84 10.05 22.23 0.22 -4.62 16 19 C -0.10 -4.21 9.07 22.34 0.20 -4.01 16 20 C -0.11 -4.71 5.40 -19.72 -0.11 -4.81 16 21 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 22 H 0.05 2.23 8.09 -2.39 -0.02 2.21 16 23 H 0.06 2.54 8.01 -2.39 -0.02 2.52 16 24 H 0.04 1.28 8.11 -2.39 -0.02 1.27 16 25 H 0.11 2.69 8.14 -2.39 -0.02 2.68 16 26 H 0.37 9.74 7.94 -89.70 -0.71 9.03 16 27 H 0.40 6.69 9.06 -74.06 -0.67 6.02 16 28 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.11 4.88 7.39 -2.91 -0.02 4.86 16 Total: -1.00 -67.15 249.84 0.84 -66.32 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.26 Total: 20.74 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 2.31 Total: -38.37 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -1.89 Total: -80.47 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.17 Total: -13.46 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.85 Total: 45.24 kcal Total: -67.15 0.84 -66.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259711524.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.779 kcal (2) G-P(sol) polarization free energy of solvation -67.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds