Wall clock time and date at job start Mon Mar 30 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38257 * 120.00351 * 2 1 4 4 C 1.38217 * 120.00551 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99726 * 359.97438 * 4 3 2 6 6 C 1.38211 * 120.00012 * 359.95796 * 5 4 3 7 7 C 1.50703 * 119.99838 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47383 * 270.77811 * 7 6 5 9 9 C 1.50693 * 109.47024 * 30.78643 * 7 6 5 10 10 H 1.07997 * 120.00422 * 359.97438 * 9 7 6 11 11 C 1.37880 * 120.00105 * 179.97438 * 9 7 6 12 12 N 1.31515 * 119.99754 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 120.00129 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46929 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.46846 * 60.00223 * 13 11 9 16 16 H 1.48498 * 109.46984 * 299.99929 * 13 11 9 17 17 N 1.46501 * 109.46854 * 150.78462 * 7 6 5 18 18 C 1.34784 * 119.99956 * 294.90028 * 17 7 6 19 19 O 1.21278 * 119.99568 * 5.10497 * 18 17 7 20 20 C 1.38222 * 120.00248 * 180.20771 * 2 1 3 21 21 H 1.09007 * 109.46886 * 90.00227 * 1 2 3 22 22 H 1.08996 * 109.47408 * 210.00082 * 1 2 3 23 23 H 1.08995 * 109.47326 * 330.00171 * 1 2 3 24 24 H 1.08007 * 119.99612 * 359.97438 * 3 2 1 25 25 H 1.07996 * 120.00239 * 179.97438 * 4 3 2 26 26 H 1.07995 * 119.99692 * 179.97438 * 5 4 3 27 27 H 0.97005 * 119.99952 * 0.02562 * 12 11 9 28 28 H 0.97002 * 120.00409 * 114.90267 * 17 7 6 29 29 H 1.08002 * 119.99613 * 185.10794 * 18 17 7 30 30 H 1.08003 * 119.99623 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5021 0.0003 8 1 4.5265 -2.8101 -1.0274 9 6 5.6434 -2.3265 0.7256 10 1 5.9040 -1.3659 1.1447 11 6 6.5086 -3.3923 0.8542 12 7 6.1911 -4.5622 0.3443 13 14 8.1318 -3.1745 1.7527 14 1 8.8737 -4.4609 1.7532 15 1 7.8701 -2.7539 3.1525 16 1 8.9416 -2.1357 1.0668 17 7 3.5353 -3.5274 0.6760 18 6 3.2612 -3.4106 1.9905 19 8 3.5959 -2.4128 2.5932 20 6 2.1981 -1.1970 -0.0043 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.6582 2.1327 -0.0004 25 1 4.1204 2.1326 -0.0010 26 1 5.3517 0.0000 -0.0014 27 1 5.3483 -4.6752 -0.1226 28 1 3.2035 -4.2905 0.1774 29 1 2.7436 -4.2055 2.5069 30 1 1.6580 -2.1323 -0.0081 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259721647.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:57 Heat of formation + Delta-G solvation = -35.701173 kcal Electronic energy + Delta-G solvation = -14780.547681 eV Core-core repulsion = 12346.676269 eV Total energy + Delta-G solvation = -2433.871412 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77055 -39.29346 -36.46135 -33.81008 -33.58894 -31.82173 -28.66518 -27.33177 -25.38064 -23.23491 -22.18133 -21.12235 -18.94237 -18.83178 -17.59265 -16.46901 -15.80902 -15.70679 -15.19929 -15.04378 -14.81556 -14.39791 -14.23812 -13.86745 -13.79343 -12.96560 -12.75974 -12.68855 -12.57302 -12.00001 -11.89141 -11.63788 -11.08183 -10.77492 -10.43896 -9.65600 -9.45376 -9.27310 -8.49976 -6.26440 0.60963 0.64443 1.49860 1.56398 1.75573 2.18744 2.54757 2.79611 3.05598 3.34128 4.05677 4.08691 4.20964 4.36293 4.48078 4.57935 4.76570 4.84137 4.85691 4.92295 5.00650 5.28285 5.37058 5.66576 5.75333 5.76695 5.95698 6.17604 6.24831 6.30776 6.69103 7.02589 7.46221 7.77838 8.84750 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037465 B = 0.010009 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.193123 B = 2796.767119 C = 3160.218629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.101 4.101 3 C -0.142 4.142 4 C -0.127 4.127 5 C -0.136 4.136 6 C -0.063 4.063 7 C 0.281 3.719 8 H 0.035 0.965 9 C -0.582 4.582 10 H 0.037 0.963 11 C -0.016 4.016 12 N -0.926 5.926 13 Si 1.102 2.898 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.271 1.271 17 N -0.715 5.715 18 C 0.485 3.515 19 O -0.590 6.590 20 C -0.133 4.133 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.146 0.854 25 H 0.137 0.863 26 H 0.106 0.894 27 H 0.267 0.733 28 H 0.394 0.606 29 H 0.146 0.854 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.851 5.202 -2.212 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.101 4.101 3 C -0.160 4.160 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.064 4.064 7 C 0.178 3.822 8 H 0.052 0.948 9 C -0.621 4.621 10 H 0.055 0.945 11 C -0.217 4.217 12 N -0.564 5.564 13 Si 0.926 3.074 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.196 1.196 17 N -0.367 5.367 18 C 0.253 3.747 19 O -0.468 6.468 20 C -0.151 4.151 21 H 0.100 0.900 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.163 0.837 25 H 0.155 0.845 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.228 0.772 29 H 0.161 0.839 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.239 5.108 -1.318 9.783 hybrid contribution -1.111 0.117 -0.597 1.267 sum -9.350 5.225 -1.916 10.881 Atomic orbital electron populations 1.20751 0.88935 1.03207 1.03025 1.20269 0.97655 0.92752 0.99427 1.21218 0.93842 0.98210 1.02728 1.21360 0.95161 0.97583 1.00350 1.21179 0.99983 0.92871 1.01446 1.20440 0.94159 0.95971 0.95794 1.17512 0.88715 0.83584 0.92367 0.94756 1.22279 1.02639 0.98624 1.38564 0.94464 1.26769 1.05651 0.92460 0.96785 1.70887 1.26004 1.24313 1.35174 0.83093 0.72855 0.76148 0.75286 1.20497 1.21873 1.19628 1.46998 1.53090 1.25857 1.10739 1.22759 0.79739 0.89776 0.82377 1.90608 1.54223 1.34795 1.67131 1.20925 0.93235 0.98139 1.02835 0.89974 0.91738 0.90276 0.83677 0.84519 0.87561 0.92186 0.77212 0.83890 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 10.01 71.23 0.71 -1.66 16 2 C -0.10 -3.31 5.88 -19.87 -0.12 -3.43 16 3 C -0.14 -4.51 9.70 22.27 0.22 -4.30 16 4 C -0.13 -4.54 10.05 22.27 0.22 -4.32 16 5 C -0.14 -6.01 8.88 22.27 0.20 -5.81 16 6 C -0.06 -2.83 4.49 -19.87 -0.09 -2.91 16 7 C 0.28 13.69 2.52 43.50 0.11 13.80 16 8 H 0.03 1.75 8.01 -2.39 -0.02 1.73 16 9 C -0.58 -32.58 6.50 25.60 0.17 -32.42 16 10 H 0.04 2.21 6.08 -2.91 -0.02 2.20 16 11 C -0.02 -0.88 5.39 84.66 0.46 -0.43 16 12 N -0.93 -52.56 13.50 21.45 0.29 -52.27 16 13 Si 1.10 51.93 29.90 68.60 2.05 53.98 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 N -0.71 -30.03 2.97 -463.44 -1.38 -31.41 16 18 C 0.48 20.88 11.59 129.79 1.50 22.39 16 19 O -0.59 -31.49 15.38 -3.02 -0.05 -31.53 16 20 C -0.13 -5.14 8.53 22.27 0.19 -4.95 16 21 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 22 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 23 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 24 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 25 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 26 H 0.11 4.99 6.47 -2.91 -0.02 4.97 16 27 H 0.27 14.50 6.25 -92.70 -0.58 13.92 16 28 H 0.39 13.81 8.72 -92.71 -0.81 13.00 16 29 H 0.15 4.65 8.06 -2.91 -0.02 4.62 16 30 H 0.12 4.16 7.37 -2.91 -0.02 4.14 16 Total: -1.00 -70.25 257.99 5.02 -65.23 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.53 Total: 20.04 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 3.57 Total: -24.04 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -1.09 Total: -83.68 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.05 Total: -31.53 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.98 kcal Total: -70.25 5.02 -65.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721647.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.530 kcal (2) G-P(sol) polarization free energy of solvation -70.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds