Wall clock time and date at job start Mon Mar 30 2020 03:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 120.00174 * 2 1 4 4 C 1.38211 * 120.00296 * 179.97438 * 3 2 1 5 5 C 1.38266 * 119.99775 * 359.75017 * 4 3 2 6 6 C 1.38212 * 119.99637 * 0.50179 * 5 4 3 7 7 C 1.50701 * 119.99951 * 179.76617 * 6 5 4 8 8 H 1.09003 * 109.47484 * 198.67957 * 7 6 5 9 9 C 1.50707 * 109.46957 * 78.68164 * 7 6 5 10 10 H 1.08006 * 119.99945 * 359.97438 * 9 7 6 11 11 C 1.37880 * 120.00004 * 179.72741 * 9 7 6 12 12 N 1.31513 * 120.00060 * 0.27144 * 11 9 7 13 13 Si 1.86793 * 119.99823 * 180.27393 * 11 9 7 14 14 H 1.48505 * 109.47516 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46979 * 119.99928 * 13 11 9 16 16 H 1.48498 * 109.47304 * 239.99894 * 13 11 9 17 17 N 1.46498 * 109.47061 * 318.68310 * 7 6 5 18 18 C 1.34774 * 120.00033 * 274.41886 * 17 7 6 19 19 O 1.21278 * 119.99823 * 4.95875 * 18 17 7 20 20 C 1.38214 * 119.99613 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.46728 * 270.02596 * 1 2 3 22 22 H 1.08991 * 109.47063 * 30.02137 * 1 2 3 23 23 H 1.08995 * 109.46865 * 150.02464 * 1 2 3 24 24 H 1.07996 * 120.00153 * 0.02562 * 3 2 1 25 25 H 1.07994 * 120.00505 * 180.02562 * 4 3 2 26 26 H 1.07996 * 119.99729 * 180.27397 * 5 4 3 27 27 H 0.96993 * 120.00282 * 179.97438 * 12 11 9 28 28 H 0.97001 * 120.00172 * 94.42533 * 17 7 6 29 29 H 1.07995 * 119.99966 * 184.95799 * 18 17 7 30 30 H 1.07994 * 120.00542 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 -0.0001 0.0063 6 6 3.5806 -1.1970 0.0010 7 6 4.3341 -2.5021 0.0020 8 1 3.6741 -3.3030 -0.3316 9 6 4.8205 -2.8003 1.3969 10 1 4.6059 -2.1132 2.2020 11 6 5.5352 -3.9528 1.6461 12 7 5.7969 -4.7893 0.6656 13 14 6.1315 -4.3261 3.3765 14 1 5.7092 -3.2355 4.2918 15 1 5.5459 -5.6113 3.8354 16 1 7.6129 -4.4285 3.3783 17 7 5.4807 -2.4047 -0.9047 18 6 5.3238 -2.6577 -2.2191 19 8 4.2182 -2.8777 -2.6665 20 6 2.1980 -1.1970 0.0005 21 1 -0.3633 0.0005 1.0277 22 1 -0.3633 0.8897 -0.5141 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6584 2.1326 0.0004 25 1 4.1205 2.1325 0.0010 26 1 5.3517 0.0000 0.0112 27 1 6.2999 -5.5998 0.8409 28 1 6.3528 -2.1582 -0.5589 29 1 6.1825 -2.6645 -2.8740 30 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259721651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:00 Heat of formation + Delta-G solvation = -45.347019 kcal Electronic energy + Delta-G solvation = -14475.537890 eV Core-core repulsion = 12041.248203 eV Total energy + Delta-G solvation = -2434.289687 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55839 -39.38042 -36.39187 -34.03845 -33.23450 -32.06323 -28.80489 -27.57905 -25.30275 -22.86362 -22.66326 -20.75875 -19.34494 -17.79801 -17.38166 -16.71951 -16.42078 -15.82259 -15.44461 -14.89524 -14.68561 -14.36512 -14.08416 -13.81011 -13.56522 -13.06584 -12.93379 -12.83834 -12.55814 -12.26168 -11.82482 -11.59410 -11.47233 -10.92357 -10.55390 -9.56889 -9.53505 -9.26415 -8.21563 -6.43650 0.62651 0.67426 1.39883 1.44230 1.55438 2.13741 2.37191 2.79869 3.08140 3.37195 4.09014 4.12953 4.25833 4.39896 4.51052 4.60476 4.76112 4.86076 4.97332 4.99814 5.20021 5.31529 5.44803 5.59913 5.70891 5.81149 5.88028 5.95030 6.19998 6.33048 6.68580 7.15552 7.29988 7.72581 8.81975 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.010087 C = 0.008549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.238273 B = 2775.138531 C = 3274.442686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C -0.141 4.141 4 C -0.120 4.120 5 C -0.130 4.130 6 C -0.071 4.071 7 C 0.302 3.698 8 H 0.000 1.000 9 C -0.541 4.541 10 H 0.060 0.940 11 C 0.032 3.968 12 N -0.898 5.898 13 Si 0.964 3.036 14 H -0.268 1.268 15 H -0.285 1.285 16 H -0.272 1.272 17 N -0.681 5.681 18 C 0.477 3.523 19 O -0.632 6.632 20 C -0.145 4.145 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.149 0.851 25 H 0.147 0.853 26 H 0.120 0.880 27 H 0.266 0.734 28 H 0.399 0.601 29 H 0.155 0.845 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.622 10.254 0.219 10.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.097 4.097 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.149 4.149 6 C -0.072 4.072 7 C 0.199 3.801 8 H 0.018 0.982 9 C -0.579 4.579 10 H 0.078 0.922 11 C -0.172 4.172 12 N -0.535 5.535 13 Si 0.789 3.211 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.197 1.197 17 N -0.329 5.329 18 C 0.247 3.753 19 O -0.516 6.516 20 C -0.164 4.164 21 H 0.097 0.903 22 H 0.104 0.896 23 H 0.077 0.923 24 H 0.167 0.833 25 H 0.165 0.835 26 H 0.138 0.862 27 H 0.075 0.925 28 H 0.233 0.767 29 H 0.171 0.829 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.298 9.909 -0.132 10.173 hybrid contribution 0.831 -0.909 0.884 1.516 sum -1.467 9.000 0.752 9.149 Atomic orbital electron populations 1.20783 0.89339 1.03235 1.02936 1.20216 0.97524 0.92627 0.99333 1.21236 0.94320 0.97716 1.02618 1.21418 0.94818 0.97928 0.99597 1.21011 1.00067 0.91949 1.01827 1.20674 0.94176 0.96744 0.95591 1.17224 0.84881 0.88823 0.89208 0.98178 1.21378 1.36487 1.06753 0.93275 0.92203 1.25815 0.95359 0.95102 1.00892 1.70141 1.38516 1.11531 1.33290 0.85419 0.78196 0.77844 0.79621 1.19232 1.21141 1.19706 1.46859 1.12961 1.65550 1.07498 1.23092 0.92833 0.75200 0.84212 1.90570 1.31072 1.52911 1.77015 1.20975 0.94132 0.97849 1.03459 0.90297 0.89561 0.92252 0.83344 0.83510 0.86235 0.92490 0.76687 0.82937 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.74 10.01 71.24 0.71 -2.03 16 2 C -0.10 -3.34 5.88 -19.87 -0.12 -3.45 16 3 C -0.14 -4.27 9.70 22.27 0.22 -4.05 16 4 C -0.12 -3.80 10.05 22.27 0.22 -3.58 16 5 C -0.13 -5.05 9.31 22.27 0.21 -4.84 16 6 C -0.07 -3.22 4.86 -19.86 -0.10 -3.32 16 7 C 0.30 15.49 2.00 43.50 0.09 15.58 16 8 H 0.00 0.02 7.49 -2.39 -0.02 0.00 16 9 C -0.54 -28.51 8.59 25.60 0.22 -28.29 16 10 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 11 C 0.03 1.64 5.39 84.66 0.46 2.10 16 12 N -0.90 -49.19 12.78 21.45 0.27 -48.92 16 13 Si 0.96 41.20 29.54 68.60 2.03 43.23 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 15 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 N -0.68 -30.59 3.68 -463.44 -1.71 -32.30 16 18 C 0.48 20.84 12.60 129.79 1.63 22.48 16 19 O -0.63 -33.84 16.88 -3.02 -0.05 -33.89 16 20 C -0.15 -6.29 9.32 22.27 0.21 -6.08 16 21 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 23 H 0.06 1.56 8.08 -2.39 -0.02 1.55 16 24 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 25 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 26 H 0.12 4.36 7.76 -2.91 -0.02 4.34 16 27 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.40 16.16 8.71 -92.71 -0.81 15.36 16 29 H 0.16 4.89 8.06 -2.91 -0.02 4.87 16 30 H 0.10 4.33 8.03 -2.91 -0.02 4.31 16 Total: -1.00 -67.61 268.42 4.62 -62.99 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.33 Total: 24.40 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 3.75 Total: -15.50 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -1.43 Total: -81.22 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.05 Total: -33.89 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -67.61 4.62 -62.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.640 kcal (2) G-P(sol) polarization free energy of solvation -67.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds