Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48496 * 109.47564 * 269.99871 * 3 2 1 5 5 H 1.48501 * 109.46846 * 30.00646 * 3 2 1 6 6 H 1.48505 * 109.46689 * 149.99792 * 3 2 1 7 7 C 1.37871 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99918 * 184.78552 * 7 2 1 9 9 C 1.50701 * 120.00094 * 4.77659 * 7 2 1 10 10 H 1.09010 * 109.46972 * 174.68236 * 9 7 2 11 11 C 1.53000 * 109.47061 * 54.68730 * 9 7 2 12 12 N 1.46502 * 109.47233 * 64.99865 * 11 9 7 13 13 C 1.34776 * 120.00073 * 179.72854 * 12 11 9 14 14 O 1.21284 * 119.99679 * 0.27036 * 13 12 11 15 15 C 1.50695 * 109.47298 * 294.68263 * 9 7 2 16 16 C 1.38233 * 120.00456 * 271.48972 * 15 9 7 17 17 C 1.38233 * 120.00152 * 179.78771 * 16 15 9 18 18 C 1.38230 * 119.99859 * 0.44058 * 17 16 15 19 19 C 1.38236 * 120.00519 * 359.81531 * 18 17 16 20 20 C 1.38241 * 119.99625 * 359.97438 * 19 18 17 21 21 H 0.97003 * 119.99758 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46918 * 305.00113 * 11 9 7 23 23 H 1.08995 * 109.47448 * 184.99675 * 11 9 7 24 24 H 0.97001 * 119.99673 * 359.97438 * 12 11 9 25 25 H 1.07999 * 120.00159 * 180.27157 * 13 12 11 26 26 H 1.08005 * 119.99486 * 359.97438 * 16 15 9 27 27 H 1.07998 * 119.99692 * 180.27575 * 17 16 15 28 28 H 1.08002 * 120.00083 * 179.83358 * 18 17 16 29 29 H 1.07997 * 120.00590 * 179.97438 * 19 18 17 30 30 H 1.07994 * 120.00167 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1957 0.0775 9 6 1.2549 -2.4968 -0.1098 10 1 1.9657 -3.3195 -0.1887 11 6 0.3652 -2.4705 -1.3543 12 7 1.2045 -2.4045 -2.5533 13 6 0.6344 -2.3770 -3.7742 14 8 -0.5735 -2.4019 -3.8801 15 6 0.3990 -2.6882 1.1157 16 6 0.9205 -3.3146 2.2321 17 6 0.1367 -3.4862 3.3578 18 6 -1.1714 -3.0397 3.3637 19 6 -1.6948 -2.4180 2.2454 20 6 -0.9096 -2.2425 1.1212 21 1 -0.4850 0.8401 -0.0004 22 1 -0.2851 -1.5966 -1.3175 23 1 -0.2426 -3.3747 -1.3857 24 1 2.1706 -2.3842 -2.4685 25 1 1.2532 -2.3327 -4.6583 26 1 1.9414 -3.6671 2.2260 27 1 0.5457 -3.9716 4.2316 28 1 -1.7847 -3.1762 4.2422 29 1 -2.7169 -2.0695 2.2498 30 1 -1.3182 -1.7565 0.2477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259765225.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = -15.764374 kcal Electronic energy + Delta-G solvation = -14671.967567 eV Core-core repulsion = 12238.960680 eV Total energy + Delta-G solvation = -2433.006887 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.67468 -37.97305 -35.05141 -32.67263 -30.92465 -29.82142 -27.65755 -25.28063 -22.54663 -21.54058 -20.38076 -19.78616 -17.08785 -16.39490 -15.67820 -15.08616 -14.69680 -14.00301 -13.88541 -13.66164 -12.96137 -12.76583 -12.21432 -11.90747 -11.68681 -11.53096 -11.03773 -10.97828 -10.68168 -10.25908 -10.03715 -9.48893 -9.27680 -9.14071 -8.67305 -8.00120 -7.82013 -7.48069 -6.08770 -4.29187 2.46177 2.55235 3.20476 3.29318 3.30041 3.50098 4.28433 4.31807 4.93657 5.12682 5.71356 5.78516 5.86754 5.98114 6.33467 6.43790 6.57478 6.71526 6.74389 6.90132 7.08624 7.23708 7.37529 7.46229 7.53817 7.69971 7.80008 8.03839 8.08583 8.19772 8.40844 8.71550 9.03547 9.39219 10.82688 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.019887 B = 0.013170 C = 0.009478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.633719 B = 2125.540319 C = 2953.489030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.060 0.940 9 C 0.064 3.936 10 H 0.034 0.966 11 C 0.110 3.890 12 N -0.707 5.707 13 C 0.478 3.522 14 O -0.578 6.578 15 C -0.027 4.027 16 C -0.131 4.131 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.142 4.142 20 C -0.068 4.068 21 H 0.265 0.735 22 H 0.111 0.889 23 H 0.028 0.972 24 H 0.397 0.603 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -3.949 0.333 4.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.131 4.131 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.045 3.955 10 H 0.052 0.948 11 C -0.014 4.014 12 N -0.357 5.357 13 C 0.245 3.755 14 O -0.456 6.456 15 C -0.028 4.028 16 C -0.150 4.150 17 C -0.160 4.160 18 C -0.170 4.170 19 C -0.160 4.160 20 C -0.087 4.087 21 H 0.075 0.925 22 H 0.128 0.872 23 H 0.046 0.954 24 H 0.231 0.769 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.244 -3.819 0.264 4.025 hybrid contribution 1.017 1.167 0.320 1.581 sum 2.261 -2.652 0.584 3.533 Atomic orbital electron populations 1.69733 1.05845 1.26712 1.48277 1.24945 0.94833 0.99206 0.94149 0.86567 0.79873 0.83347 0.78087 1.20615 1.21196 1.19963 1.20966 0.93013 0.89636 1.51596 0.92167 1.18065 0.92618 0.96369 0.88498 0.94812 1.21780 0.94195 1.01663 0.83717 1.46467 1.10861 1.71422 1.06967 1.22298 0.89870 0.76751 0.86559 1.90646 1.16567 1.50814 1.87621 1.20166 0.93555 0.92528 0.96535 1.20858 0.98826 1.01492 0.93784 1.20793 0.94737 1.02740 0.97758 1.20786 0.95793 1.02421 0.98001 1.21072 0.99311 1.01036 0.94586 1.21420 0.93546 0.94960 0.98742 0.92490 0.87174 0.95395 0.76923 0.87336 0.87692 0.88018 0.88180 0.87924 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.31 7.99 55.43 0.44 -21.87 16 2 C 0.07 1.81 5.12 -17.82 -0.09 1.72 16 3 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.51 -12.49 8.22 -34.44 -0.28 -12.77 16 8 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 9 C 0.06 1.43 2.35 -92.93 -0.22 1.21 16 10 H 0.03 0.71 8.10 -51.92 -0.42 0.29 16 11 C 0.11 2.45 3.96 -4.04 -0.02 2.43 16 12 N -0.71 -13.43 5.35 -64.68 -0.35 -13.78 16 13 C 0.48 8.78 12.64 54.05 0.68 9.46 16 14 O -0.58 -13.43 17.17 5.55 0.10 -13.33 16 15 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 16 C -0.13 -2.73 9.71 -39.59 -0.38 -3.11 16 17 C -0.14 -2.70 10.05 -39.59 -0.40 -3.10 16 18 C -0.15 -2.88 10.05 -39.59 -0.40 -3.27 16 19 C -0.14 -2.90 10.05 -39.58 -0.40 -3.30 16 20 C -0.07 -1.55 7.46 -39.58 -0.30 -1.85 16 21 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 22 H 0.11 2.82 4.70 -51.93 -0.24 2.57 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.40 6.59 8.34 -40.82 -0.34 6.25 16 25 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.10 2.01 8.06 -52.48 -0.42 1.58 16 27 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 29 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.14 3.41 5.18 -52.49 -0.27 3.14 16 LS Contribution 256.54 15.07 3.87 3.87 Total: -1.00 -28.64 256.54 -6.61 -35.25 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.36 Total: 8.52 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.29 Total: -13.68 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.10 Total: -35.65 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.10 Total: -13.33 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.64 -6.61 -35.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765225.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.486 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds