Wall clock time and date at job start Mon Mar 30 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47192 * 86.19360 * 3 2 1 5 5 H 1.48501 * 109.47293 * 206.19340 * 3 2 1 6 6 H 1.48495 * 109.47029 * 326.19398 * 3 2 1 7 7 C 1.37881 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99683 * 6.23820 * 7 2 1 9 9 C 1.50703 * 120.00115 * 186.23284 * 7 2 1 10 10 H 1.09004 * 109.47086 * 5.13622 * 9 7 2 11 11 C 1.53001 * 109.47189 * 125.13756 * 9 7 2 12 12 N 1.46495 * 109.47078 * 294.30749 * 11 9 7 13 13 C 1.34771 * 120.00018 * 180.02562 * 12 11 9 14 14 O 1.21277 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.50696 * 109.46920 * 245.13852 * 9 7 2 16 16 C 1.38232 * 120.00389 * 295.35099 * 15 9 7 17 17 C 1.38240 * 120.00463 * 179.81561 * 16 15 9 18 18 C 1.38236 * 119.99306 * 0.39216 * 17 16 15 19 19 C 1.38225 * 120.00453 * 359.86021 * 18 17 16 20 20 C 1.38236 * 120.00202 * 359.95414 * 19 18 17 21 21 H 0.96996 * 120.00232 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46620 * 54.30375 * 11 9 7 23 23 H 1.08997 * 109.46791 * 174.30380 * 11 9 7 24 24 H 0.97004 * 120.00095 * 359.97438 * 12 11 9 25 25 H 1.08000 * 120.00264 * 180.02562 * 13 12 11 26 26 H 1.07999 * 119.99522 * 359.97438 * 16 15 9 27 27 H 1.07994 * 120.00299 * 180.23097 * 17 16 15 28 28 H 1.08007 * 119.99408 * 179.83908 * 18 17 16 29 29 H 1.08003 * 119.99961 * 179.97438 * 19 18 17 30 30 H 1.08001 * 120.00123 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4161 2.0929 1.3970 5 1 3.5846 1.4183 -0.6180 6 1 1.4891 2.6281 -0.7790 7 6 2.0045 -1.1941 0.0005 8 1 1.4693 -2.1266 -0.1007 9 6 3.5049 -1.1978 0.1422 10 1 3.8554 -0.1816 0.3230 11 6 3.9039 -2.0917 1.3182 12 7 3.4125 -1.5040 2.5669 13 6 3.6482 -2.1221 3.7411 14 8 4.2666 -3.1651 3.7639 15 6 4.1277 -1.7262 -1.1242 16 6 3.9068 -3.0353 -1.5093 17 6 4.4750 -3.5188 -2.6730 18 6 5.2707 -2.6955 -3.4475 19 6 5.4959 -1.3880 -3.0598 20 6 4.9246 -0.9033 -1.8981 21 1 -0.4850 0.8400 -0.0004 22 1 3.4676 -3.0818 1.1862 23 1 4.9899 -2.1755 1.3586 24 1 2.9182 -0.6695 2.5487 25 1 3.2856 -1.6891 4.6616 26 1 3.2881 -3.6796 -0.9022 27 1 4.2993 -4.5405 -2.9757 28 1 5.7167 -3.0740 -4.3554 29 1 6.1179 -0.7449 -3.6648 30 1 5.1009 0.1182 -1.5950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259765228.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:47 Heat of formation + Delta-G solvation = -22.259937 kcal Electronic energy + Delta-G solvation = -14396.332485 eV Core-core repulsion = 11963.043930 eV Total energy + Delta-G solvation = -2433.288556 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.97800 -38.32177 -35.19131 -32.79676 -31.63111 -30.27804 -28.15642 -25.36977 -22.69304 -21.99973 -20.72459 -19.74598 -17.30568 -17.08090 -16.15228 -15.31212 -14.69853 -14.43222 -14.08572 -13.92978 -13.13295 -12.83816 -12.75170 -12.45559 -12.28015 -12.01387 -11.49869 -11.07771 -10.67667 -10.49818 -10.10995 -9.84330 -9.39771 -9.35295 -8.76783 -8.34754 -8.29611 -7.90223 -6.28154 -4.28175 2.02582 2.07403 3.08300 3.21073 3.22917 3.27164 4.05567 4.20019 4.46593 5.04717 5.45326 5.47671 5.53329 5.61604 5.85960 6.00524 6.13357 6.19145 6.32571 6.46338 6.63512 6.70300 6.84464 7.04570 7.08100 7.20266 7.40680 7.51344 7.68395 8.14880 8.30361 8.76714 8.78327 9.31162 10.84107 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.013240 C = 0.009035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.553927 B = 2114.227086 C = 3098.409399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.260 1.260 6 H -0.286 1.286 7 C -0.503 4.503 8 H 0.079 0.921 9 C 0.027 3.973 10 H 0.051 0.949 11 C 0.130 3.870 12 N -0.711 5.711 13 C 0.484 3.516 14 O -0.578 6.578 15 C -0.032 4.032 16 C -0.110 4.110 17 C -0.123 4.123 18 C -0.148 4.148 19 C -0.124 4.124 20 C -0.134 4.134 21 H 0.266 0.734 22 H 0.060 0.940 23 H 0.044 0.956 24 H 0.404 0.596 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.608 0.243 -0.736 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.129 4.129 3 Si 0.694 3.306 4 H -0.200 1.200 5 H -0.184 1.184 6 H -0.212 1.212 7 C -0.540 4.540 8 H 0.097 0.903 9 C 0.008 3.992 10 H 0.069 0.931 11 C 0.006 3.994 12 N -0.362 5.362 13 C 0.252 3.748 14 O -0.456 6.456 15 C -0.033 4.033 16 C -0.128 4.128 17 C -0.141 4.141 18 C -0.166 4.166 19 C -0.142 4.142 20 C -0.152 4.152 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.239 0.761 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.853 -0.376 -0.716 7.894 hybrid contribution -0.094 1.444 -0.235 1.466 sum 7.759 1.068 -0.951 7.889 Atomic orbital electron populations 1.69884 1.06232 1.27202 1.49158 1.25097 0.94728 0.98725 0.94315 0.87024 0.80754 0.84117 0.78755 1.20042 1.18444 1.21175 1.20851 0.87603 0.95040 1.50511 0.90307 1.18655 0.97164 0.95326 0.88035 0.93067 1.21455 0.96311 0.97738 0.83882 1.46464 1.55626 1.27066 1.07090 1.22441 0.79934 0.85140 0.87326 1.90648 1.42188 1.24570 1.88214 1.20368 0.92093 0.93012 0.97819 1.20987 0.99345 0.95866 0.96572 1.21055 0.98325 0.99225 0.95526 1.20886 1.01164 0.94517 1.00036 1.20975 1.00533 0.95698 0.96975 1.21080 0.98748 0.99578 0.95812 0.92344 0.92123 0.93740 0.76061 0.86473 0.86326 0.87023 0.87260 0.87193 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 13.96 55.43 0.77 -24.17 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.87 19.18 27.20 -169.99 -4.62 14.55 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.26 -5.50 5.80 56.52 0.33 -5.17 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.50 -12.58 8.15 -34.44 -0.28 -12.86 16 8 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 9 C 0.03 0.58 1.91 -92.92 -0.18 0.41 16 10 H 0.05 1.08 4.39 -51.93 -0.23 0.85 16 11 C 0.13 2.60 4.71 -4.04 -0.02 2.58 16 12 N -0.71 -12.90 5.36 -64.68 -0.35 -13.25 16 13 C 0.48 8.22 12.64 54.05 0.68 8.90 16 14 O -0.58 -12.23 17.17 5.56 0.10 -12.13 16 15 C -0.03 -0.65 4.77 -104.63 -0.50 -1.15 16 16 C -0.11 -2.11 8.94 -39.58 -0.35 -2.46 16 17 C -0.12 -2.08 10.05 -39.58 -0.40 -2.47 16 18 C -0.15 -2.35 10.05 -39.59 -0.40 -2.75 16 19 C -0.12 -2.05 10.05 -39.59 -0.40 -2.45 16 20 C -0.13 -2.53 9.67 -39.58 -0.38 -2.92 16 21 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 22 H 0.06 1.28 7.36 -51.93 -0.38 0.90 16 23 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.40 7.08 8.37 -40.82 -0.34 6.74 16 25 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.12 2.27 7.39 -52.49 -0.39 1.89 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.11 2.05 7.29 -52.49 -0.38 1.67 16 LS Contribution 261.63 15.07 3.94 3.94 Total: -1.00 -29.88 261.63 -5.95 -35.82 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -3.47 Total: 8.59 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.32 Total: -13.35 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.43 Total: -37.42 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.10 Total: -12.13 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.62 Total: 14.55 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.88 -5.95 -35.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765228.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.562 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds