Wall clock time and date at job start Mon Mar 30 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47192 * 86.19360 * 3 2 1 5 5 H 1.48501 * 109.47293 * 206.19340 * 3 2 1 6 6 H 1.48495 * 109.47029 * 326.19398 * 3 2 1 7 7 C 1.37881 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99683 * 6.23820 * 7 2 1 9 9 C 1.50703 * 120.00115 * 186.23284 * 7 2 1 10 10 H 1.09004 * 109.47086 * 5.13622 * 9 7 2 11 11 C 1.53001 * 109.47189 * 125.13756 * 9 7 2 12 12 N 1.46495 * 109.47078 * 294.30749 * 11 9 7 13 13 C 1.34771 * 120.00018 * 180.02562 * 12 11 9 14 14 O 1.21277 * 120.00099 * 359.97438 * 13 12 11 15 15 C 1.50696 * 109.46920 * 245.13852 * 9 7 2 16 16 C 1.38232 * 120.00389 * 295.35099 * 15 9 7 17 17 C 1.38240 * 120.00463 * 179.81561 * 16 15 9 18 18 C 1.38236 * 119.99306 * 0.39216 * 17 16 15 19 19 C 1.38225 * 120.00453 * 359.86021 * 18 17 16 20 20 C 1.38236 * 120.00202 * 359.95414 * 19 18 17 21 21 H 0.96996 * 120.00232 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46620 * 54.30375 * 11 9 7 23 23 H 1.08997 * 109.46791 * 174.30380 * 11 9 7 24 24 H 0.97004 * 120.00095 * 359.97438 * 12 11 9 25 25 H 1.08000 * 120.00264 * 180.02562 * 13 12 11 26 26 H 1.07999 * 119.99522 * 359.97438 * 16 15 9 27 27 H 1.07994 * 120.00299 * 180.23097 * 17 16 15 28 28 H 1.08007 * 119.99408 * 179.83908 * 18 17 16 29 29 H 1.08003 * 119.99961 * 179.97438 * 19 18 17 30 30 H 1.08001 * 120.00123 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4161 2.0929 1.3970 5 1 3.5846 1.4183 -0.6180 6 1 1.4891 2.6281 -0.7790 7 6 2.0045 -1.1941 0.0005 8 1 1.4693 -2.1266 -0.1007 9 6 3.5049 -1.1978 0.1422 10 1 3.8554 -0.1816 0.3230 11 6 3.9039 -2.0917 1.3182 12 7 3.4125 -1.5040 2.5669 13 6 3.6482 -2.1221 3.7411 14 8 4.2666 -3.1651 3.7639 15 6 4.1277 -1.7262 -1.1242 16 6 3.9068 -3.0353 -1.5093 17 6 4.4750 -3.5188 -2.6730 18 6 5.2707 -2.6955 -3.4475 19 6 5.4959 -1.3880 -3.0598 20 6 4.9246 -0.9033 -1.8981 21 1 -0.4850 0.8400 -0.0004 22 1 3.4676 -3.0818 1.1862 23 1 4.9899 -2.1755 1.3586 24 1 2.9182 -0.6695 2.5487 25 1 3.2856 -1.6891 4.6616 26 1 3.2881 -3.6796 -0.9022 27 1 4.2993 -4.5405 -2.9757 28 1 5.7167 -3.0740 -4.3554 29 1 6.1179 -0.7449 -3.6648 30 1 5.1009 0.1182 -1.5950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259765228.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:47 Heat of formation + Delta-G solvation = -42.259448 kcal Electronic energy + Delta-G solvation = -14397.199729 eV Core-core repulsion = 11963.043930 eV Total energy + Delta-G solvation = -2434.155800 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45486 -39.75989 -36.79356 -34.56699 -33.30026 -31.64715 -29.69135 -27.17791 -24.24773 -23.38845 -22.15570 -21.33387 -19.14058 -18.58272 -17.58909 -16.80225 -16.36984 -15.91976 -15.60495 -15.43323 -14.77294 -14.44395 -14.30817 -13.97286 -13.80138 -13.44038 -13.20465 -12.75988 -12.14326 -11.98622 -11.84568 -11.59266 -11.10599 -10.91582 -10.68209 -9.90235 -9.67430 -9.35877 -8.27832 -6.32486 0.64151 0.68327 1.34624 1.41724 1.49454 1.88728 2.33834 2.67150 2.98981 3.17806 4.04717 4.23850 4.24834 4.30589 4.40727 4.43668 4.64714 4.73772 4.81630 4.91022 5.14186 5.27527 5.33689 5.54073 5.62673 5.72571 5.77914 5.95579 6.27105 6.34955 6.68657 6.77853 7.30231 7.37953 8.88293 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.013240 C = 0.009035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.553927 B = 2114.227086 C = 3098.409399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.023 3.977 3 Si 0.926 3.074 4 H -0.250 1.250 5 H -0.242 1.242 6 H -0.296 1.296 7 C -0.495 4.495 8 H 0.030 0.970 9 C 0.036 3.964 10 H 0.058 0.942 11 C 0.139 3.861 12 N -0.715 5.715 13 C 0.486 3.514 14 O -0.620 6.620 15 C -0.063 4.063 16 C -0.133 4.133 17 C -0.126 4.126 18 C -0.140 4.140 19 C -0.121 4.121 20 C -0.149 4.149 21 H 0.267 0.733 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.409 0.591 25 H 0.181 0.819 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.751 1.349 -1.341 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.175 4.175 3 Si 0.750 3.250 4 H -0.174 1.174 5 H -0.166 1.166 6 H -0.223 1.223 7 C -0.533 4.533 8 H 0.048 0.952 9 C 0.017 3.983 10 H 0.076 0.924 11 C 0.014 3.986 12 N -0.366 5.366 13 C 0.256 3.744 14 O -0.502 6.502 15 C -0.064 4.064 16 C -0.151 4.151 17 C -0.144 4.144 18 C -0.158 4.158 19 C -0.139 4.139 20 C -0.167 4.167 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.245 0.755 25 H 0.196 0.804 26 H 0.120 0.880 27 H 0.155 0.845 28 H 0.166 0.834 29 H 0.162 0.838 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.014 0.728 -1.306 10.125 hybrid contribution -0.752 0.965 -0.107 1.228 sum 9.262 1.693 -1.413 9.521 Atomic orbital electron populations 1.70042 1.08270 1.28118 1.51618 1.25855 0.95269 1.02397 0.93979 0.86054 0.79817 0.79046 0.80083 1.17394 1.16595 1.22276 1.20858 0.89700 0.93115 1.49593 0.95153 1.18518 0.94501 0.95975 0.89333 0.92373 1.21209 0.96363 0.96516 0.84518 1.46561 1.55696 1.27301 1.07008 1.23486 0.78447 0.84165 0.88264 1.90636 1.44145 1.26674 1.88719 1.20349 0.94120 0.94000 0.97895 1.21030 1.00326 0.95759 0.97963 1.21385 0.97733 1.00744 0.94514 1.21357 0.99736 0.94048 1.00678 1.21390 0.99864 0.96474 0.96159 1.21260 0.99039 0.99702 0.96684 0.92426 0.94446 0.93226 0.75527 0.80364 0.88019 0.84549 0.83450 0.83751 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.59 13.96 21.45 0.30 -54.29 16 2 C 0.02 1.22 5.47 84.66 0.46 1.68 16 3 Si 0.93 38.93 27.20 68.60 1.87 40.79 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 5 H -0.24 -9.40 5.80 99.48 0.58 -8.82 16 6 H -0.30 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.49 -25.65 8.15 25.60 0.21 -25.44 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C 0.04 1.53 1.91 -12.29 -0.02 1.51 16 10 H 0.06 2.38 4.39 -2.38 -0.01 2.37 16 11 C 0.14 5.62 4.71 86.38 0.41 6.03 16 12 N -0.71 -25.45 5.36 -476.95 -2.56 -28.01 16 13 C 0.49 15.76 12.64 129.79 1.64 17.40 16 14 O -0.62 -25.98 17.17 -3.02 -0.05 -26.04 16 15 C -0.06 -2.55 4.77 -19.87 -0.09 -2.64 16 16 C -0.13 -5.17 8.94 22.27 0.20 -4.97 16 17 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 18 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 19 C -0.12 -3.59 10.05 22.27 0.22 -3.36 16 20 C -0.15 -5.33 9.67 22.27 0.22 -5.11 16 21 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 22 H 0.04 1.67 7.36 -2.39 -0.02 1.65 16 23 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.41 13.85 8.37 -92.71 -0.78 13.07 16 25 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 26 H 0.10 4.17 7.39 -2.91 -0.02 4.15 16 27 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 28 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 30 H 0.12 4.00 7.29 -2.91 -0.02 3.98 16 Total: -1.00 -67.12 261.63 3.48 -63.64 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.24 Total: 26.35 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 3.69 Total: -22.44 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.26 Total: -82.30 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.04 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.87 Total: 40.79 kcal Total: -67.12 3.48 -63.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765228.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.379 kcal (2) G-P(sol) polarization free energy of solvation -67.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds