Wall clock time and date at job start Mon Mar 30 2020 02:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.76528 * 59.99828 * 9 7 2 11 11 C 1.53391 * 109.76916 * 299.26876 * 9 7 2 12 12 N 1.46431 * 108.65144 * 172.17874 * 11 9 7 13 13 C 1.39694 * 113.12091 * 53.24885 * 12 11 9 14 14 C 1.40032 * 117.65887 * 159.93810 * 13 12 11 15 15 O 1.36012 * 119.83491 * 359.67464 * 14 13 12 16 16 C 1.38193 * 120.33570 * 179.65506 * 14 13 12 17 17 C 1.38337 * 119.88581 * 359.97438 * 16 14 13 18 18 C 1.37992 * 119.91921 * 0.13859 * 17 16 14 19 19 C 1.38169 * 122.96560 * 339.85567 * 13 12 11 20 20 C 1.50838 * 122.03408 * 0.80692 * 19 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.60487 * 291.92560 * 11 9 7 23 23 H 1.09000 * 109.60722 * 52.25756 * 11 9 7 24 24 H 1.00897 * 110.99810 * 178.79047 * 12 11 9 25 25 H 0.96705 * 113.99954 * 89.99602 * 15 14 13 26 26 H 1.07999 * 120.05924 * 180.02562 * 16 14 13 27 27 H 1.08001 * 120.03830 * 180.16159 * 17 16 14 28 28 H 1.08008 * 119.70345 * 180.02562 * 18 17 16 29 29 H 1.08995 * 109.48654 * 224.17578 * 20 19 13 30 30 H 1.09001 * 109.40510 * 104.28652 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6222 -2.5617 -0.8886 11 6 0.3809 -2.5958 1.2590 12 7 -0.4775 -3.7767 1.1457 13 6 0.2338 -4.9479 0.8738 14 6 -0.3885 -6.1684 1.1633 15 8 -1.6397 -6.1803 1.6966 16 6 0.2620 -7.3610 0.9097 17 6 1.5342 -7.3503 0.3665 18 6 2.1511 -6.1492 0.0822 19 6 1.5070 -4.9468 0.3370 20 6 2.2394 -3.6675 0.0173 21 1 -0.4850 0.8401 0.0004 22 1 1.0188 -2.6903 2.1378 23 1 -0.2343 -1.7005 1.3482 24 1 -1.0529 -3.8856 1.9673 25 1 -2.3477 -6.2000 1.0381 26 1 -0.2224 -8.2998 1.1344 27 1 2.0438 -8.2810 0.1649 28 1 3.1443 -6.1449 -0.3422 29 1 2.7149 -3.7552 -0.9596 30 1 3.0009 -3.4869 0.7759 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259768066.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:19 Heat of formation + Delta-G solvation = -27.618191 kcal Electronic energy + Delta-G solvation = -14606.964691 eV Core-core repulsion = 12173.443784 eV Total energy + Delta-G solvation = -2433.520907 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.87611 -36.93530 -35.61932 -33.17672 -31.59869 -29.41229 -28.27928 -25.10420 -23.57830 -21.89430 -21.64739 -18.67701 -17.70136 -16.62877 -16.01527 -15.61580 -14.87779 -14.48977 -14.02991 -13.81139 -12.92927 -12.79895 -12.57428 -12.09987 -11.83704 -11.74034 -11.16391 -10.99288 -10.71778 -10.52831 -10.11998 -9.98838 -9.49018 -9.16494 -9.02793 -8.43060 -8.08236 -6.96671 -6.07739 -4.15626 1.68524 1.90354 3.26333 3.33700 3.36667 4.01966 4.36611 4.64955 4.82859 5.23016 5.29861 5.39209 5.70980 5.85721 6.10184 6.25566 6.26663 6.36543 6.60162 6.71480 6.81234 6.86528 6.90006 7.07587 7.22298 7.51057 7.70243 7.83111 7.93387 8.07450 8.16508 8.35211 8.89068 9.50087 10.98130 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.050687 B = 0.007963 C = 0.007020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.279392 B = 3515.273087 C = 3987.700230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.050 3.950 10 H 0.039 0.961 11 C 0.060 3.940 12 N -0.628 5.628 13 C 0.130 3.870 14 C 0.037 3.963 15 O -0.498 6.498 16 C -0.126 4.126 17 C -0.157 4.157 18 C -0.101 4.101 19 C -0.112 4.112 20 C -0.073 4.073 21 H 0.262 0.738 22 H 0.017 0.983 23 H 0.115 0.885 24 H 0.352 0.648 25 H 0.381 0.619 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 -10.271 1.431 10.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.031 3.969 10 H 0.057 0.943 11 C -0.066 4.066 12 N -0.250 5.250 13 C 0.027 3.973 14 C -0.011 4.011 15 O -0.306 6.306 16 C -0.145 4.145 17 C -0.177 4.177 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.110 4.110 21 H 0.072 0.928 22 H 0.035 0.965 23 H 0.133 0.867 24 H 0.177 0.823 25 H 0.236 0.764 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.038 -9.878 1.379 9.973 hybrid contribution 0.355 0.692 0.270 0.823 sum 0.392 -9.185 1.649 9.340 Atomic orbital electron populations 1.69878 1.05860 1.26684 1.50034 1.25023 0.94914 0.99252 0.94825 0.86564 0.79895 0.83265 0.78129 1.20652 1.19836 1.21156 1.21134 0.93018 0.90168 1.51193 0.92264 1.18789 0.92331 0.91715 0.94053 0.94327 1.22481 0.95231 0.90128 0.98729 1.56507 1.24933 1.02796 1.40715 1.19138 0.91716 0.89959 0.96531 1.18307 0.87189 0.91401 1.04177 1.84767 1.13579 1.96319 1.35961 1.21006 0.96268 0.96763 1.00478 1.20672 0.95591 0.97591 1.03823 1.21000 0.99523 0.91674 0.99738 1.19863 0.92726 0.96544 1.02420 1.20740 0.98434 0.91522 1.00348 0.92784 0.96501 0.86701 0.82292 0.76448 0.86347 0.86591 0.86426 0.91897 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.75 11.37 55.43 0.63 -24.12 16 2 C 0.06 1.67 5.29 -17.82 -0.09 1.57 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -13.86 8.54 -34.44 -0.29 -14.15 16 8 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 9 C 0.05 1.25 2.30 -91.55 -0.21 1.04 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 11 C 0.06 1.43 5.77 -3.88 -0.02 1.41 16 12 N -0.63 -13.13 6.47 -58.36 -0.38 -13.51 16 13 C 0.13 2.59 6.24 -83.63 -0.52 2.07 16 14 C 0.04 0.64 6.68 -38.93 -0.26 0.38 16 15 O -0.50 -7.64 12.54 -19.78 -0.25 -7.89 16 16 C -0.13 -1.94 9.97 -39.56 -0.39 -2.33 16 17 C -0.16 -2.34 10.05 -39.64 -0.40 -2.74 16 18 C -0.10 -1.67 9.63 -39.48 -0.38 -2.05 16 19 C -0.11 -2.20 5.74 -104.39 -0.60 -2.80 16 20 C -0.07 -1.56 5.10 -27.80 -0.14 -1.70 16 21 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 22 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 23 H 0.12 2.99 6.02 -51.93 -0.31 2.68 16 24 H 0.35 6.71 7.94 -39.29 -0.31 6.39 16 25 H 0.38 4.34 9.07 45.56 0.41 4.76 16 26 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 27 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 LS Contribution 252.27 15.07 3.80 3.80 Total: -1.00 -28.84 252.27 -7.24 -36.08 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -2.71 Total: 9.21 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -3.32 Total: -19.32 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.25 Total: -37.63 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.25 Total: -7.89 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.84 -7.24 -36.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768066.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.459 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds