Wall clock time and date at job start Mon Mar 30 2020 02:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.76528 * 59.99828 * 9 7 2 11 11 C 1.53391 * 109.76916 * 299.26876 * 9 7 2 12 12 N 1.46431 * 108.65144 * 172.17874 * 11 9 7 13 13 C 1.39694 * 113.12091 * 53.24885 * 12 11 9 14 14 C 1.40032 * 117.65887 * 159.93810 * 13 12 11 15 15 O 1.36012 * 119.83491 * 359.67464 * 14 13 12 16 16 C 1.38193 * 120.33570 * 179.65506 * 14 13 12 17 17 C 1.38337 * 119.88581 * 359.97438 * 16 14 13 18 18 C 1.37992 * 119.91921 * 0.13859 * 17 16 14 19 19 C 1.38169 * 122.96560 * 339.85567 * 13 12 11 20 20 C 1.50838 * 122.03408 * 0.80692 * 19 13 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.60487 * 291.92560 * 11 9 7 23 23 H 1.09000 * 109.60722 * 52.25756 * 11 9 7 24 24 H 1.00897 * 110.99810 * 178.79047 * 12 11 9 25 25 H 0.96705 * 113.99954 * 89.99602 * 15 14 13 26 26 H 1.07999 * 120.05924 * 180.02562 * 16 14 13 27 27 H 1.08001 * 120.03830 * 180.16159 * 17 16 14 28 28 H 1.08008 * 119.70345 * 180.02562 * 18 17 16 29 29 H 1.08995 * 109.48654 * 224.17578 * 20 19 13 30 30 H 1.09001 * 109.40510 * 104.28652 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6222 -2.5617 -0.8886 11 6 0.3809 -2.5958 1.2590 12 7 -0.4775 -3.7767 1.1457 13 6 0.2338 -4.9479 0.8738 14 6 -0.3885 -6.1684 1.1633 15 8 -1.6397 -6.1803 1.6966 16 6 0.2620 -7.3610 0.9097 17 6 1.5342 -7.3503 0.3665 18 6 2.1511 -6.1492 0.0822 19 6 1.5070 -4.9468 0.3370 20 6 2.2394 -3.6675 0.0173 21 1 -0.4850 0.8401 0.0004 22 1 1.0188 -2.6903 2.1378 23 1 -0.2343 -1.7005 1.3482 24 1 -1.0529 -3.8856 1.9673 25 1 -2.3477 -6.2000 1.0381 26 1 -0.2224 -8.2998 1.1344 27 1 2.0438 -8.2810 0.1649 28 1 3.1443 -6.1449 -0.3422 29 1 2.7149 -3.7552 -0.9596 30 1 3.0009 -3.4869 0.7759 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259768066.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:18 Heat of formation + Delta-G solvation = -47.626336 kcal Electronic energy + Delta-G solvation = -14607.832310 eV Core-core repulsion = 12173.443784 eV Total energy + Delta-G solvation = -2434.388526 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.29254 -38.37979 -37.03968 -35.04509 -33.29303 -31.03456 -29.67198 -27.00033 -25.28266 -23.43247 -23.07979 -20.31710 -19.14639 -18.36335 -17.66426 -17.10185 -16.34618 -16.28201 -15.52838 -15.22431 -14.58984 -14.43597 -14.24859 -13.77393 -13.40606 -13.21992 -12.82237 -12.59094 -12.38552 -12.34616 -11.80025 -11.56893 -11.19447 -10.95571 -10.90546 -10.44779 -9.41762 -8.46704 -8.13765 -6.29771 0.39101 0.56092 1.42080 1.42866 1.53387 2.41238 2.71415 3.09837 3.33794 3.42421 3.96783 4.17158 4.37398 4.45212 4.50116 4.66358 4.72101 4.88707 4.90162 5.14458 5.15991 5.36252 5.50711 5.51396 5.67447 5.77765 5.85895 5.95308 6.21974 6.39560 6.49755 6.81768 6.92179 7.39627 8.91304 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.050687 B = 0.007963 C = 0.007020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.279392 B = 3515.273087 C = 3987.700230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.284 1.284 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.049 3.951 10 H -0.003 1.003 11 C 0.076 3.924 12 N -0.634 5.634 13 C 0.093 3.907 14 C 0.038 3.962 15 O -0.502 6.502 16 C -0.122 4.122 17 C -0.140 4.140 18 C -0.104 4.104 19 C -0.138 4.138 20 C -0.065 4.065 21 H 0.263 0.737 22 H 0.010 0.990 23 H 0.086 0.914 24 H 0.358 0.642 25 H 0.400 0.600 26 H 0.151 0.849 27 H 0.157 0.843 28 H 0.139 0.861 29 H 0.067 0.933 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 -12.233 1.541 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.030 3.970 10 H 0.015 0.985 11 C -0.051 4.051 12 N -0.257 5.257 13 C -0.009 4.009 14 C -0.009 4.009 15 O -0.313 6.313 16 C -0.140 4.140 17 C -0.159 4.159 18 C -0.122 4.122 19 C -0.142 4.142 20 C -0.102 4.102 21 H 0.072 0.928 22 H 0.028 0.972 23 H 0.104 0.896 24 H 0.183 0.817 25 H 0.257 0.743 26 H 0.169 0.831 27 H 0.175 0.825 28 H 0.157 0.843 29 H 0.085 0.915 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.848 -11.873 1.480 11.995 hybrid contribution 0.067 1.163 0.232 1.187 sum 0.915 -10.711 1.712 10.885 Atomic orbital electron populations 1.70024 1.07257 1.27438 1.50554 1.25821 0.95720 1.02638 0.94367 0.85530 0.78709 0.78952 0.78325 1.19966 1.19117 1.20916 1.21485 0.93278 0.91425 1.51413 0.92183 1.18674 0.92706 0.92885 0.92732 0.98454 1.22049 0.94743 0.90581 0.97775 1.56427 1.25016 1.02693 1.41558 1.19388 0.92579 0.90330 0.98652 1.18439 0.87879 0.91119 1.03466 1.84716 1.13535 1.96210 1.36843 1.21411 0.96387 0.97114 0.99121 1.21147 0.95129 0.98389 1.01283 1.21252 1.00423 0.91125 0.99418 1.19882 0.93274 0.96841 1.04200 1.20544 0.97606 0.91413 1.00610 0.92787 0.97186 0.89563 0.81692 0.74331 0.83104 0.82524 0.84281 0.91471 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.75 11.37 21.45 0.24 -52.51 16 2 C 0.01 0.76 5.29 84.66 0.45 1.21 16 3 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -29.71 8.54 25.60 0.22 -29.49 16 8 H 0.06 3.21 7.75 -2.91 -0.02 3.19 16 9 C 0.05 2.55 2.30 -11.40 -0.03 2.52 16 10 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 11 C 0.08 3.76 5.77 86.52 0.50 4.26 16 12 N -0.63 -27.32 6.47 -338.56 -2.19 -29.51 16 13 C 0.09 3.67 6.24 38.31 0.24 3.90 16 14 C 0.04 1.26 6.68 22.69 0.15 1.41 16 15 O -0.50 -14.43 12.54 -93.69 -1.17 -15.61 16 16 C -0.12 -3.24 9.97 22.28 0.22 -3.02 16 17 C -0.14 -3.55 10.05 22.23 0.22 -3.32 16 18 C -0.10 -3.16 9.63 22.34 0.22 -2.95 16 19 C -0.14 -5.39 5.74 -19.71 -0.11 -5.50 16 20 C -0.06 -2.80 5.10 29.90 0.15 -2.65 16 21 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 22 H 0.01 0.49 8.11 -2.39 -0.02 0.47 16 23 H 0.09 4.75 6.02 -2.39 -0.01 4.74 16 24 H 0.36 14.01 7.94 -89.70 -0.71 13.29 16 25 H 0.40 8.32 9.07 -74.05 -0.67 7.65 16 26 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 27 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 28 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.06 2.67 8.08 -2.39 -0.02 2.65 16 Total: -1.00 -63.54 252.27 0.92 -62.62 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.22 Total: 23.47 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 2.23 Total: -33.63 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -1.95 Total: -82.02 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -1.17 Total: -15.61 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -63.54 0.92 -62.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768066.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.997 kcal (2) G-P(sol) polarization free energy of solvation -63.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds