Wall clock time and date at job start Mon Mar 30 2020 02:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 120.00035 * 2 1 4 4 H 1.48497 * 109.47016 * 269.99693 * 3 2 1 5 5 H 1.48506 * 109.47095 * 29.99858 * 3 2 1 6 6 H 1.48494 * 109.46986 * 149.99739 * 3 2 1 7 7 C 1.37876 * 119.99511 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99460 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00460 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.91767 * 58.97315 * 9 7 2 11 11 C 1.50305 * 109.86419 * 297.96660 * 9 7 2 12 12 C 1.40141 * 130.04012 * 72.50467 * 11 9 7 13 13 N 1.30656 * 105.92044 * 180.38442 * 12 11 9 14 14 O 1.21354 * 111.67351 * 0.02562 * 13 12 11 15 15 C 1.33487 * 111.36895 * 359.83830 * 14 13 12 16 16 C 1.50496 * 128.75634 * 180.29176 * 15 14 13 17 17 C 1.53371 * 109.11154 * 198.27946 * 16 15 14 18 18 C 1.53147 * 109.41515 * 313.22458 * 17 16 15 19 19 C 1.52713 * 117.92200 * 209.71143 * 18 17 16 20 20 C 1.52816 * 117.90687 * 278.77953 * 18 17 16 21 21 H 0.96999 * 119.99554 * 359.97438 * 1 2 3 22 22 H 1.07999 * 127.04090 * 0.38592 * 12 11 9 23 23 H 1.09000 * 109.53004 * 78.38216 * 16 15 14 24 24 H 1.09003 * 109.52817 * 318.17199 * 16 15 14 25 25 H 1.09005 * 109.48242 * 193.24700 * 17 16 15 26 26 H 1.09001 * 109.49166 * 73.21419 * 17 16 15 27 27 H 1.09002 * 117.50728 * 215.32975 * 19 18 17 28 28 H 1.09002 * 117.50850 * 0.35977 * 19 18 17 29 29 H 1.09003 * 117.52491 * 144.67778 * 20 18 17 30 30 H 1.09004 * 117.50200 * 359.59330 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6083 -2.5568 -0.8778 11 6 0.4210 -2.6097 1.2488 12 6 -0.7522 -1.9358 1.6140 13 7 -1.0699 -2.3858 2.7987 14 8 -0.2751 -3.2145 3.1914 15 6 0.6904 -3.4259 2.2942 16 6 1.8618 -4.3672 2.3749 17 6 2.9192 -3.9422 1.3485 18 6 2.2419 -3.6727 0.0016 19 6 3.0543 -3.9151 -1.2686 20 6 1.9209 -4.8715 -0.8901 21 1 -0.4849 0.8401 0.0004 22 1 -1.2846 -1.1960 1.0347 23 1 1.5294 -5.3822 2.1569 24 1 2.2905 -4.3304 3.3764 25 1 3.6543 -4.7388 1.2327 26 1 3.4168 -3.0357 1.6930 27 1 2.8859 -3.2427 -2.1098 28 1 4.0766 -4.2745 -1.1514 29 1 1.0069 -4.8283 -1.4824 30 1 2.1977 -5.8600 -0.5235 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930498.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:15 Heat of formation + Delta-G solvation = 63.200541 kcal Electronic energy + Delta-G solvation = -15212.389719 eV Core-core repulsion = 12782.807007 eV Total energy + Delta-G solvation = -2429.582712 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.45324 -39.77889 -35.58994 -34.56999 -33.74744 -31.04513 -29.63901 -26.03591 -24.56453 -23.10645 -22.96327 -21.98470 -19.20865 -18.24633 -18.13303 -17.80353 -16.70603 -15.98704 -15.10874 -14.92128 -14.71607 -14.27961 -13.79695 -13.54831 -13.32373 -12.94226 -12.68190 -12.40838 -12.22723 -12.11015 -11.99348 -11.77443 -11.14779 -10.77612 -10.65125 -10.49321 -10.21587 -9.51136 -8.12296 -6.25349 0.89863 1.39016 1.41061 1.49076 1.89655 2.40123 2.53897 3.17221 3.18721 3.91870 3.98970 4.05244 4.26022 4.26866 4.49600 4.58444 4.74721 4.82725 4.94321 4.97496 5.09681 5.18243 5.21301 5.36530 5.42251 5.50524 5.65423 5.76372 5.78258 5.86087 6.27237 6.84471 7.42497 7.69651 8.90178 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.023270 B = 0.015097 C = 0.010763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.981672 B = 1854.173439 C = 2600.876385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.145 3.855 10 H 0.003 0.997 11 C -0.158 4.158 12 C 0.012 3.988 13 N -0.432 5.432 14 O 0.075 5.925 15 C -0.079 4.079 16 C -0.017 4.017 17 C -0.067 4.067 18 C -0.125 4.125 19 C -0.162 4.162 20 C -0.172 4.172 21 H 0.260 0.740 22 H 0.193 0.807 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 -8.993 1.133 11.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.126 3.874 10 H 0.021 0.979 11 C -0.162 4.162 12 C -0.163 4.163 13 N -0.142 5.142 14 O 0.014 5.986 15 C -0.143 4.143 16 C -0.055 4.055 17 C -0.104 4.104 18 C -0.125 4.125 19 C -0.199 4.199 20 C -0.209 4.209 21 H 0.069 0.931 22 H 0.210 0.790 23 H 0.125 0.875 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.161 -8.620 1.991 10.242 hybrid contribution 0.185 1.698 -0.865 1.915 sum 5.346 -6.922 1.125 8.818 Atomic orbital electron populations 1.69829 1.07137 1.26858 1.51280 1.25684 0.95589 1.02252 0.94983 0.85637 0.78726 0.79612 0.78194 1.19915 1.21830 1.19298 1.21336 0.93131 0.90561 1.49243 0.91928 1.16718 0.90056 0.92432 0.88182 0.97868 1.21479 0.96638 0.96921 1.01183 1.25499 0.98274 1.00360 0.92192 1.74067 1.15482 1.07990 1.16710 1.84517 1.28727 1.44952 1.40422 1.24700 0.95987 1.03659 0.89965 1.20142 0.88061 0.95583 1.01683 1.21072 0.96191 1.01875 0.91286 1.21568 1.01428 0.96708 0.92778 1.22831 0.96668 1.02213 0.98186 1.23043 0.99288 0.95131 1.03406 0.93058 0.79037 0.87522 0.87831 0.87571 0.92568 0.90860 0.87006 0.90946 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.81 9.42 21.45 0.20 -50.61 16 2 C 0.01 0.72 5.31 84.65 0.45 1.16 16 3 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.50 -26.35 8.32 25.60 0.21 -26.14 16 8 H 0.06 3.19 7.75 -2.91 -0.02 3.17 16 9 C 0.15 6.97 2.24 -12.21 -0.03 6.94 16 10 H 0.00 0.18 8.03 -2.39 -0.02 0.16 16 11 C -0.16 -7.69 5.14 -20.20 -0.10 -7.79 16 12 C 0.01 0.63 10.68 85.33 0.91 1.55 16 13 N -0.43 -21.23 12.10 -58.39 -0.71 -21.93 16 14 O 0.07 3.30 11.20 76.17 0.85 4.16 16 15 C -0.08 -3.26 7.34 24.95 0.18 -3.07 16 16 C -0.02 -0.49 6.29 29.91 0.19 -0.30 16 17 C -0.07 -2.00 5.58 30.77 0.17 -1.83 16 18 C -0.12 -4.52 1.26 -52.09 -0.07 -4.58 16 19 C -0.16 -5.13 9.86 30.52 0.30 -4.83 16 20 C -0.17 -5.19 9.94 30.55 0.30 -4.88 16 21 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 22 H 0.19 10.55 5.95 -2.91 -0.02 10.54 16 23 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.11 2.28 8.11 -2.38 -0.02 2.26 16 26 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 27 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 30 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -61.52 250.60 6.04 -55.49 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.14 Total: 11.54 kcal Atomic # 6 Polarization: -46.29 SS G_CDS: 2.52 Total: -43.76 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.50 Total: -72.54 kcal Atomic # 8 Polarization: 3.30 SS G_CDS: 0.85 Total: 4.16 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -61.52 6.04 -55.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930498.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.687 kcal (2) G-P(sol) polarization free energy of solvation -61.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds