Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99994 * 2 1 4 4 H 1.48501 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47077 * 299.99363 * 3 2 1 6 6 H 1.48500 * 109.47347 * 59.99637 * 3 2 1 7 7 C 1.37878 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99747 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.92768 * 298.95384 * 9 7 2 11 11 C 1.50303 * 109.87867 * 59.99763 * 9 7 2 12 12 C 1.40145 * 130.04045 * 287.20699 * 11 9 7 13 13 N 1.30656 * 105.90958 * 179.97438 * 12 11 9 14 14 O 1.21357 * 111.67961 * 359.52893 * 13 12 11 15 15 C 1.33493 * 111.36826 * 0.61455 * 14 13 12 16 16 C 1.50499 * 128.74149 * 179.27685 * 15 14 13 17 17 C 1.53382 * 109.11002 * 162.01855 * 16 15 14 18 18 C 1.53141 * 109.38895 * 46.71073 * 17 16 15 19 19 C 1.52689 * 117.98397 * 150.01067 * 18 17 16 20 20 C 1.52750 * 117.86903 * 80.90839 * 18 17 16 21 21 H 0.97005 * 120.00021 * 0.02562 * 1 2 3 22 22 H 1.08002 * 127.04069 * 359.71287 * 12 11 9 23 23 H 1.08999 * 109.52571 * 281.91138 * 16 15 14 24 24 H 1.09000 * 109.52848 * 42.05510 * 16 15 14 25 25 H 1.09001 * 109.48328 * 166.68264 * 17 16 15 26 26 H 1.08995 * 109.48869 * 286.73345 * 17 16 15 27 27 H 1.08997 * 117.50602 * 359.69733 * 19 18 17 28 28 H 1.09006 * 117.49667 * 144.74582 * 19 18 17 29 29 H 1.08996 * 117.50842 * 215.43433 * 20 18 17 30 30 H 1.08996 * 117.50907 * 0.50465 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6353 -2.5726 0.8969 11 6 0.3838 -2.5886 -1.2239 12 6 -0.8026 -1.9129 -1.5397 13 7 -1.1586 -2.3466 -2.7197 14 8 -0.3706 -3.1607 -3.1545 15 6 0.6235 -3.3843 -2.2921 16 6 1.7934 -4.3215 -2.4258 17 6 2.8794 -3.9154 -1.4217 18 6 2.2400 -3.6734 -0.0513 19 6 3.0844 -3.9454 1.1914 20 6 1.9390 -4.8906 0.8211 21 1 -0.4850 0.8401 -0.0004 22 1 -1.3194 -1.1861 -0.9304 23 1 1.4687 -5.3413 -2.2190 24 1 2.1922 -4.2644 -3.4386 25 1 3.6179 -4.7132 -1.3424 26 1 3.3662 -3.0016 -1.7622 27 1 4.1023 -4.3043 1.0397 28 1 2.9394 -3.2914 2.0514 29 1 1.0405 -4.8584 1.4374 30 1 2.2033 -5.8713 0.4257 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930507.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = 78.773098 kcal Electronic energy + Delta-G solvation = -15222.203990 eV Core-core repulsion = 12793.296555 eV Total energy + Delta-G solvation = -2428.907435 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.57296 -38.30269 -33.83533 -32.98787 -31.82191 -29.32233 -27.88928 -24.24132 -22.99334 -21.65013 -21.21538 -20.32194 -17.54821 -16.40115 -16.23129 -16.08616 -15.00310 -14.38488 -13.54760 -13.39195 -13.04868 -12.46682 -12.19619 -11.95025 -11.63738 -11.22059 -10.95874 -10.92151 -10.80721 -10.39685 -10.16876 -9.96578 -9.58998 -9.19182 -8.94248 -8.68737 -8.49462 -7.71421 -6.13876 -4.22112 2.69028 3.23237 3.31782 3.34336 3.82809 4.19361 4.30594 4.57470 5.17095 5.33847 5.43354 5.57319 5.67270 5.82961 5.92770 6.04463 6.11993 6.18713 6.21451 6.41948 6.52808 6.59542 6.78319 6.79815 6.87474 7.18138 7.28074 7.58372 7.71286 7.82890 8.19321 8.81796 9.43643 9.54923 10.89347 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.015162 C = 0.010794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.418480 B = 1846.269849 C = 2593.435000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.496 4.496 8 H 0.065 0.935 9 C 0.145 3.855 10 H 0.042 0.958 11 C -0.124 4.124 12 C 0.038 3.962 13 N -0.420 5.420 14 O 0.065 5.935 15 C -0.099 4.099 16 C -0.016 4.016 17 C -0.073 4.073 18 C -0.099 4.099 19 C -0.168 4.168 20 C -0.190 4.190 21 H 0.263 0.737 22 H 0.212 0.788 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 -6.989 -0.508 8.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.534 4.534 8 H 0.083 0.917 9 C 0.126 3.874 10 H 0.060 0.940 11 C -0.128 4.128 12 C -0.138 4.138 13 N -0.131 5.131 14 O 0.006 5.994 15 C -0.163 4.163 16 C -0.055 4.055 17 C -0.110 4.110 18 C -0.099 4.099 19 C -0.205 4.205 20 C -0.227 4.227 21 H 0.073 0.927 22 H 0.228 0.772 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.980 -6.616 -1.333 7.378 hybrid contribution 0.896 1.110 0.588 1.543 sum 3.877 -5.506 -0.745 6.775 Atomic orbital electron populations 1.69667 1.06136 1.26463 1.50584 1.24952 0.94842 0.99382 0.94755 0.86430 0.80095 0.83289 0.77618 1.19655 1.21071 1.20895 1.21084 0.93119 0.89308 1.49853 0.91727 1.16889 0.89341 0.90969 0.90153 0.94034 1.21318 0.96449 0.95555 0.99506 1.25655 0.96620 0.99329 0.92206 1.74113 1.15020 1.07914 1.16080 1.84551 1.27725 1.46560 1.40606 1.23810 0.95436 1.04759 0.92258 1.19775 0.90140 0.95635 0.99908 1.21046 0.95674 1.01292 0.92994 1.21631 1.00986 0.96733 0.90582 1.22776 0.94691 1.02701 1.00286 1.22978 1.00160 0.94429 1.05166 0.92744 0.77187 0.90826 0.90888 0.92034 0.90545 0.90067 0.88791 0.89506 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 9.20 55.43 0.51 -23.26 16 2 C 0.06 1.61 5.31 -17.82 -0.09 1.52 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.50 -12.73 8.35 -34.44 -0.29 -13.02 16 8 H 0.06 1.65 7.76 -52.48 -0.41 1.24 16 9 C 0.15 3.44 2.28 -92.80 -0.21 3.23 16 10 H 0.04 1.07 8.03 -51.93 -0.42 0.65 16 11 C -0.12 -3.00 5.12 -105.13 -0.54 -3.54 16 12 C 0.04 0.96 10.57 -17.34 -0.18 0.78 16 13 N -0.42 -10.25 12.10 30.41 0.37 -9.89 16 14 O 0.07 1.49 11.20 18.46 0.21 1.70 16 15 C -0.10 -2.14 7.34 -35.44 -0.26 -2.40 16 16 C -0.02 -0.27 6.29 -27.78 -0.17 -0.45 16 17 C -0.07 -1.24 5.58 -26.46 -0.15 -1.38 16 18 C -0.10 -1.90 1.26 -154.40 -0.19 -2.10 16 19 C -0.17 -2.85 9.87 -26.86 -0.27 -3.12 16 20 C -0.19 -3.16 9.93 -26.83 -0.27 -3.42 16 21 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 22 H 0.21 5.45 5.90 -52.49 -0.31 5.14 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 26 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 250.24 15.07 3.77 3.77 Total: -1.00 -27.59 250.24 -6.43 -34.02 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.64 Total: 1.90 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.62 Total: -23.91 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.88 Total: -33.15 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.21 Total: 1.70 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.59 -6.43 -34.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930507.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.798 kcal (2) G-P(sol) polarization free energy of solvation -27.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds