Wall clock time and date at job start Mon Mar 30 2020 02:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99994 * 2 1 4 4 H 1.48501 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47077 * 299.99363 * 3 2 1 6 6 H 1.48500 * 109.47347 * 59.99637 * 3 2 1 7 7 C 1.37878 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99747 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.92768 * 298.95384 * 9 7 2 11 11 C 1.50303 * 109.87867 * 59.99763 * 9 7 2 12 12 C 1.40145 * 130.04045 * 287.20699 * 11 9 7 13 13 N 1.30656 * 105.90958 * 179.97438 * 12 11 9 14 14 O 1.21357 * 111.67961 * 359.52893 * 13 12 11 15 15 C 1.33493 * 111.36826 * 0.61455 * 14 13 12 16 16 C 1.50499 * 128.74149 * 179.27685 * 15 14 13 17 17 C 1.53382 * 109.11002 * 162.01855 * 16 15 14 18 18 C 1.53141 * 109.38895 * 46.71073 * 17 16 15 19 19 C 1.52689 * 117.98397 * 150.01067 * 18 17 16 20 20 C 1.52750 * 117.86903 * 80.90839 * 18 17 16 21 21 H 0.97005 * 120.00021 * 0.02562 * 1 2 3 22 22 H 1.08002 * 127.04069 * 359.71287 * 12 11 9 23 23 H 1.08999 * 109.52571 * 281.91138 * 16 15 14 24 24 H 1.09000 * 109.52848 * 42.05510 * 16 15 14 25 25 H 1.09001 * 109.48328 * 166.68264 * 17 16 15 26 26 H 1.08995 * 109.48869 * 286.73345 * 17 16 15 27 27 H 1.08997 * 117.50602 * 359.69733 * 19 18 17 28 28 H 1.09006 * 117.49667 * 144.74582 * 19 18 17 29 29 H 1.08996 * 117.50842 * 215.43433 * 20 18 17 30 30 H 1.08996 * 117.50907 * 0.50465 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6353 -2.5726 0.8969 11 6 0.3838 -2.5886 -1.2239 12 6 -0.8026 -1.9129 -1.5397 13 7 -1.1586 -2.3466 -2.7197 14 8 -0.3706 -3.1607 -3.1545 15 6 0.6235 -3.3843 -2.2921 16 6 1.7934 -4.3215 -2.4258 17 6 2.8794 -3.9154 -1.4217 18 6 2.2400 -3.6734 -0.0513 19 6 3.0844 -3.9454 1.1914 20 6 1.9390 -4.8906 0.8211 21 1 -0.4850 0.8401 -0.0004 22 1 -1.3194 -1.1861 -0.9304 23 1 1.4687 -5.3413 -2.2190 24 1 2.1922 -4.2644 -3.4386 25 1 3.6179 -4.7132 -1.3424 26 1 3.3662 -3.0016 -1.7622 27 1 4.1023 -4.3043 1.0397 28 1 2.9394 -3.2914 2.0514 29 1 1.0405 -4.8584 1.4374 30 1 2.2033 -5.8713 0.4257 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930507.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:18 Heat of formation + Delta-G solvation = 64.197712 kcal Electronic energy + Delta-G solvation = -15222.836026 eV Core-core repulsion = 12793.296555 eV Total energy + Delta-G solvation = -2429.539471 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.43307 -39.78391 -35.60665 -34.56186 -33.72084 -31.04116 -29.63982 -26.03667 -24.55555 -23.11258 -22.95977 -21.97550 -19.19776 -18.24700 -18.13174 -17.79352 -16.71028 -15.97944 -15.10227 -14.91586 -14.72011 -14.28500 -13.80547 -13.54207 -13.30853 -12.93436 -12.70966 -12.39198 -12.22602 -12.11192 -11.96501 -11.74860 -11.15840 -10.77272 -10.64977 -10.49008 -10.21745 -9.50229 -8.11371 -6.25665 0.91177 1.37854 1.41113 1.50448 1.91985 2.39830 2.55137 3.16885 3.18870 3.93231 3.99895 4.05781 4.26249 4.26939 4.49961 4.58893 4.75251 4.82845 4.94254 4.98062 5.09752 5.18828 5.21205 5.37500 5.42524 5.50357 5.65750 5.77318 5.79941 5.85999 6.27006 6.84237 7.42368 7.71555 8.89738 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.015162 C = 0.010794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.418480 B = 1846.269849 C = 2593.435000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.144 3.856 10 H 0.003 0.997 11 C -0.158 4.158 12 C 0.016 3.984 13 N -0.434 5.434 14 O 0.073 5.927 15 C -0.079 4.079 16 C -0.017 4.017 17 C -0.067 4.067 18 C -0.125 4.125 19 C -0.162 4.162 20 C -0.172 4.172 21 H 0.260 0.740 22 H 0.195 0.805 23 H 0.106 0.894 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.056 0.944 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.260 -8.925 -1.284 10.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.126 3.874 10 H 0.021 0.979 11 C -0.162 4.162 12 C -0.160 4.160 13 N -0.145 5.145 14 O 0.012 5.988 15 C -0.144 4.144 16 C -0.055 4.055 17 C -0.104 4.104 18 C -0.125 4.125 19 C -0.199 4.199 20 C -0.209 4.209 21 H 0.069 0.931 22 H 0.212 0.788 23 H 0.124 0.876 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.111 -8.550 -2.097 10.180 hybrid contribution 0.204 1.685 0.848 1.898 sum 5.315 -6.865 -1.249 8.771 Atomic orbital electron populations 1.69813 1.07135 1.26710 1.51408 1.25686 0.95587 1.02278 0.95010 0.85574 0.79452 0.79954 0.77104 1.18674 1.21803 1.20667 1.21374 0.93155 0.90545 1.49062 0.91878 1.16735 0.89802 0.92482 0.88425 0.97944 1.21446 0.96750 0.97111 1.00920 1.25576 0.97740 0.99958 0.92719 1.74071 1.15872 1.08722 1.15871 1.84517 1.27834 1.45824 1.40593 1.24699 0.95426 1.03746 0.90504 1.20138 0.87941 0.95677 1.01710 1.21069 0.96182 1.01996 0.91164 1.21556 1.01472 0.96489 0.92966 1.22830 0.96342 1.02342 0.98370 1.23030 0.99389 0.95065 1.03406 0.93066 0.78823 0.87567 0.87881 0.87593 0.92547 0.87009 0.90808 0.90934 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.68 9.20 21.45 0.20 -50.48 16 2 C 0.01 0.68 5.31 84.66 0.45 1.13 16 3 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.50 -26.24 8.35 25.60 0.21 -26.03 16 8 H 0.06 3.22 7.76 -2.91 -0.02 3.20 16 9 C 0.14 6.94 2.28 -12.20 -0.03 6.91 16 10 H 0.00 0.14 8.03 -2.39 -0.02 0.12 16 11 C -0.16 -7.71 5.12 -20.20 -0.10 -7.81 16 12 C 0.02 0.81 10.57 85.33 0.90 1.71 16 13 N -0.43 -21.44 12.10 -58.37 -0.71 -22.15 16 14 O 0.07 3.23 11.20 76.12 0.85 4.09 16 15 C -0.08 -3.30 7.34 24.95 0.18 -3.12 16 16 C -0.02 -0.49 6.29 29.91 0.19 -0.30 16 17 C -0.07 -2.00 5.58 30.77 0.17 -1.83 16 18 C -0.12 -4.52 1.26 -52.11 -0.07 -4.58 16 19 C -0.16 -5.11 9.87 30.51 0.30 -4.81 16 20 C -0.17 -5.19 9.93 30.53 0.30 -4.89 16 21 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 22 H 0.20 10.68 5.90 -2.91 -0.02 10.66 16 23 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.11 2.29 8.11 -2.39 -0.02 2.27 16 26 H 0.06 1.91 8.06 -2.39 -0.02 1.89 16 27 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 29 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 30 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -61.52 250.24 6.02 -55.50 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 1.14 Total: 11.54 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 2.51 Total: -43.62 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -0.51 Total: -72.63 kcal Atomic # 8 Polarization: 3.23 SS G_CDS: 0.85 Total: 4.09 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -61.52 6.02 -55.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930507.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.695 kcal (2) G-P(sol) polarization free energy of solvation -61.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds