Wall clock time and date at job start Mon Mar 30 2020 02:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86797 * 120.00119 * 2 1 4 4 H 1.48508 * 109.46901 * 269.99640 * 3 2 1 5 5 H 1.48501 * 109.47265 * 29.99657 * 3 2 1 6 6 H 1.48501 * 109.47316 * 150.00047 * 3 2 1 7 7 C 1.38662 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99770 * 359.97438 * 7 2 1 9 9 O 1.34825 * 119.99532 * 180.02562 * 7 2 1 10 10 C 1.35751 * 116.99782 * 185.06415 * 9 7 2 11 11 C 1.38702 * 119.88787 * 354.38106 * 10 9 7 12 12 C 1.38080 * 119.79514 * 179.97438 * 11 10 9 13 13 C 1.38135 * 119.90526 * 0.23182 * 12 11 10 14 14 C 1.38712 * 120.49587 * 359.66284 * 13 12 11 15 15 C 1.37745 * 119.89107 * 0.20542 * 14 13 12 16 16 C 1.50609 * 121.88735 * 180.10060 * 15 14 13 17 17 N 1.46634 * 110.48929 * 342.48955 * 16 15 14 18 18 C 1.47167 * 110.22749 * 52.52160 * 17 16 15 19 19 C 1.50728 * 118.46496 * 179.97438 * 14 13 12 20 20 H 0.97003 * 119.99659 * 0.02562 * 1 2 3 21 21 H 1.08007 * 120.10141 * 0.02562 * 11 10 9 22 22 H 1.08003 * 120.04597 * 180.02562 * 12 11 10 23 23 H 1.08001 * 119.74998 * 180.02562 * 13 12 11 24 24 H 1.09002 * 109.30142 * 102.80732 * 16 15 14 25 25 H 1.09000 * 109.29657 * 222.38722 * 16 15 14 26 26 H 1.00899 * 111.00354 * 289.12044 * 17 16 15 27 27 H 1.09000 * 109.62845 * 48.45477 * 18 17 16 28 28 H 1.08999 * 109.62749 * 168.84153 * 18 17 16 29 29 H 1.09001 * 109.38637 * 283.60785 * 19 14 13 30 30 H 1.09003 * 109.38320 * 43.29390 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4002 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2009 0.0005 8 1 1.4688 -2.1361 0.0014 9 8 3.3571 -1.2009 0.0011 10 6 3.9734 -2.4057 -0.1052 11 6 3.2208 -3.5707 -0.0903 12 6 3.8496 -4.7952 -0.1990 13 6 5.2246 -4.8552 -0.3173 14 6 5.9810 -3.6926 -0.3348 15 6 5.3598 -2.4678 -0.2295 16 6 6.1366 -1.1776 -0.2457 17 7 7.5542 -1.4285 0.0332 18 6 8.0754 -2.4647 -0.8726 19 6 7.4780 -3.8114 -0.4651 20 1 -0.4850 0.8401 -0.0004 21 1 2.1462 -3.5202 0.0053 22 1 3.2676 -5.7049 -0.1883 23 1 5.7138 -5.8143 -0.4026 24 1 6.0394 -0.7108 -1.2259 25 1 5.7363 -0.5065 0.5142 26 1 7.6922 -1.6891 0.9982 27 1 7.7884 -2.2325 -1.8982 28 1 9.1620 -2.5045 -0.7965 29 1 7.9010 -4.1202 0.4908 30 1 7.7171 -4.5577 -1.2228 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259993887.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:57 Heat of formation + Delta-G solvation = -26.183712 kcal Electronic energy + Delta-G solvation = -14617.372456 eV Core-core repulsion = 12183.913752 eV Total energy + Delta-G solvation = -2433.458704 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.38631 -39.28105 -37.04170 -34.54085 -32.81909 -31.67253 -29.50814 -27.29726 -25.22683 -24.22578 -22.62488 -21.38287 -19.52238 -18.85181 -17.16739 -16.77712 -16.35199 -15.91510 -15.71003 -15.45797 -14.89124 -14.68384 -14.33969 -14.11628 -14.03146 -13.26600 -12.96564 -12.83002 -12.64065 -12.40570 -12.12602 -12.05475 -11.70463 -11.40489 -10.92296 -9.55663 -9.41842 -9.05085 -8.52713 -6.25288 0.44039 0.62268 1.29974 1.33849 1.50395 2.25736 2.70818 2.96440 3.09947 3.37496 3.83123 3.94472 4.12344 4.23845 4.34647 4.44576 4.54346 4.61392 4.71836 4.84907 4.94746 5.02498 5.12301 5.27350 5.39711 5.61395 5.68913 5.70768 5.85884 6.00399 6.22563 6.45288 6.81741 7.54878 8.58906 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033780 B = 0.010047 C = 0.007856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.683793 B = 2786.163724 C = 3563.320550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.236 6.236 10 C 0.126 3.874 11 C -0.249 4.249 12 C -0.077 4.077 13 C -0.185 4.185 14 C -0.046 4.046 15 C -0.192 4.192 16 C 0.116 3.884 17 N -0.677 5.677 18 C 0.053 3.947 19 C -0.106 4.106 20 H 0.285 0.715 21 H 0.107 0.893 22 H 0.139 0.861 23 H 0.150 0.850 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.347 0.653 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.475 -6.573 -0.739 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.096 0.904 9 O -0.143 6.143 10 C 0.076 3.924 11 C -0.268 4.268 12 C -0.095 4.095 13 C -0.203 4.203 14 C -0.046 4.046 15 C -0.195 4.195 16 C -0.014 4.014 17 N -0.305 5.305 18 C -0.077 4.077 19 C -0.144 4.144 20 H 0.095 0.905 21 H 0.125 0.875 22 H 0.157 0.843 23 H 0.167 0.833 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.165 0.835 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.626 -5.671 -1.103 16.659 hybrid contribution -1.498 -0.283 0.399 1.576 sum 14.128 -5.954 -0.703 15.348 Atomic orbital electron populations 1.69732 1.06928 1.29622 1.50058 1.25265 0.95853 1.02093 0.95443 0.85260 0.78979 0.77416 0.79370 1.19082 1.19207 1.18358 1.20697 0.78189 0.96032 1.52700 0.90377 1.83495 1.21011 1.27092 1.82725 1.19551 0.92578 0.85230 0.95032 1.21286 1.00180 0.93555 1.11801 1.21103 0.95543 0.96286 0.96580 1.21128 0.93149 0.98550 1.07493 1.19691 0.97238 0.90891 0.96794 1.19831 0.90397 0.97964 1.11325 1.20447 0.87003 0.92478 1.01500 1.61075 1.14088 1.45903 1.09400 1.22208 1.00758 0.87923 0.96763 1.21217 0.88710 1.00481 1.04031 0.90543 0.87537 0.84305 0.83254 0.91334 0.91868 0.83515 0.91615 0.87209 0.88719 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.64 13.96 21.62 0.30 -55.34 16 2 C 0.01 0.70 5.49 84.83 0.47 1.17 16 3 Si 0.97 45.81 28.62 68.60 1.96 47.77 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.40 -23.84 9.94 67.92 0.68 -23.16 16 8 H 0.08 4.91 5.42 -2.91 -0.02 4.90 16 9 O -0.24 -12.87 7.70 -22.70 -0.17 -13.05 16 10 C 0.13 6.02 6.61 22.64 0.15 6.17 16 11 C -0.25 -11.29 9.16 22.34 0.20 -11.08 16 12 C -0.08 -2.72 10.04 22.21 0.22 -2.50 16 13 C -0.18 -5.58 9.65 22.36 0.22 -5.36 16 14 C -0.05 -1.43 5.77 -19.86 -0.11 -1.54 16 15 C -0.19 -7.51 5.81 -19.75 -0.11 -7.62 16 16 C 0.12 4.15 5.94 85.58 0.51 4.66 16 17 N -0.68 -18.33 6.96 -518.34 -3.61 -21.94 16 18 C 0.05 1.12 6.62 86.21 0.57 1.69 16 19 C -0.11 -2.21 5.82 29.81 0.17 -2.04 16 20 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 21 H 0.11 5.31 5.62 -2.91 -0.02 5.30 16 22 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 23 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 24 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.06 2.50 7.82 -2.39 -0.02 2.48 16 26 H 0.35 8.49 8.74 -89.69 -0.78 7.71 16 27 H 0.07 1.53 8.05 -2.39 -0.02 1.51 16 28 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.40 252.07 1.81 -64.59 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.37 Total: 17.60 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 2.96 Total: -39.62 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -3.31 Total: -77.28 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.17 Total: -13.05 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.96 Total: 47.77 kcal Total: -66.40 1.81 -64.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993887.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.408 kcal (2) G-P(sol) polarization free energy of solvation -66.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds