Wall clock time and date at job start Mon Mar 30 2020 02:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31057 * 1 3 3 Si 1.86790 * 120.00198 * 2 1 4 4 H 1.48503 * 109.47209 * 275.64811 * 3 2 1 5 5 H 1.48500 * 109.47158 * 35.64983 * 3 2 1 6 6 H 1.48502 * 109.47536 * 155.64719 * 3 2 1 7 7 C 1.39682 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99912 * 4.26574 * 7 2 1 9 9 C 1.41343 * 119.99845 * 184.27425 * 7 2 1 10 10 C 1.46534 * 127.13520 * 308.59259 * 9 7 2 11 11 C 1.34812 * 106.77859 * 179.97438 * 10 9 7 12 12 N 1.36751 * 109.08910 * 359.96108 * 11 10 9 13 13 H 0.97001 * 124.72516 * 180.02562 * 12 11 10 14 14 C 1.34909 * 110.54905 * 0.03312 * 12 11 10 15 15 C 1.50706 * 126.03632 * 179.97438 * 14 12 11 16 16 C 1.52992 * 117.49885 * 8.60213 * 15 14 12 17 17 C 1.52996 * 117.50151 * 299.97680 * 15 14 12 18 18 C 1.51344 * 107.45857 * 179.97438 * 11 10 9 19 19 O 1.43965 * 105.97443 * 17.56578 * 18 11 10 20 20 C 1.44024 * 104.26653 * 332.14019 * 19 18 11 21 21 H 0.96997 * 119.99829 * 359.97438 * 1 2 3 22 22 H 1.09000 * 115.54792 * 154.30860 * 15 14 12 23 23 H 1.08998 * 117.50291 * 359.97438 * 16 15 14 24 24 H 1.09000 * 117.49841 * 145.02118 * 16 15 14 25 25 H 1.08995 * 117.49964 * 214.97861 * 17 15 14 26 26 H 1.09008 * 117.49658 * 359.97438 * 17 15 14 27 27 H 1.08994 * 110.16272 * 258.41765 * 18 11 10 28 28 H 1.09002 * 110.15919 * 136.71259 * 18 11 10 29 29 H 1.08997 * 110.18853 * 146.84547 * 20 19 18 30 30 H 1.09003 * 110.18742 * 268.61181 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6176 0.0000 4 1 2.3728 2.1152 -1.3933 5 1 1.5068 2.6152 0.8160 6 1 3.5967 1.4086 0.5773 7 6 2.0090 -1.2097 -0.0005 8 1 1.4712 -2.1437 -0.0705 9 6 3.4194 -1.2114 0.0907 10 6 4.3603 -0.4499 -0.7352 11 6 5.5982 -0.7572 -0.2988 12 7 5.5000 -1.6487 0.7335 13 1 6.2549 -2.0211 1.2157 14 6 4.2072 -1.9383 0.9877 15 6 3.7019 -2.8795 2.0508 16 6 4.7195 -3.4202 3.0572 17 6 4.1523 -4.3396 1.9737 18 6 6.5836 0.0217 -1.1431 19 8 5.8243 1.0711 -1.7715 20 6 4.4916 0.5342 -1.8707 21 1 -0.4850 0.8400 0.0004 22 1 2.6924 -2.6826 2.4117 23 1 5.7545 -3.0957 2.9502 24 1 4.3796 -3.5791 4.0806 25 1 3.4393 -5.1033 2.2843 26 1 4.8138 -4.6197 1.1538 27 1 7.0254 -0.6270 -1.8994 28 1 7.3637 0.4483 -0.5124 29 1 3.7560 1.3315 -1.7645 30 1 4.3606 0.0270 -2.8266 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022613.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:28 Heat of formation + Delta-G solvation = 47.929264 kcal Electronic energy + Delta-G solvation = -14812.496388 eV Core-core repulsion = 12382.251464 eV Total energy + Delta-G solvation = -2430.244924 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57239 -37.81033 -35.85189 -33.12634 -30.48832 -29.29071 -27.50886 -24.88752 -23.60006 -22.00658 -20.71098 -19.08121 -18.41265 -17.28590 -16.16944 -15.53975 -15.12404 -14.67213 -14.37841 -13.73376 -13.28210 -12.82181 -12.54727 -12.12579 -11.75753 -11.28713 -11.20781 -11.11616 -11.01398 -10.34851 -10.18221 -10.00071 -9.79956 -9.70263 -9.31960 -8.74702 -7.26289 -6.74254 -6.33035 -4.11893 2.93260 3.24593 3.37624 3.56733 3.72301 3.81216 4.34661 4.48244 4.55170 5.10053 5.21266 5.34475 5.39824 5.58422 5.65328 5.76248 5.79162 5.87002 6.07934 6.20049 6.29422 6.38925 6.42313 6.68326 6.92840 7.22832 7.24879 7.51830 7.89402 8.18389 8.56649 8.71164 8.97192 9.29778 10.70206 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.021206 B = 0.015853 C = 0.009942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.061072 B = 1765.856997 C = 2815.672954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.089 3.911 3 Si 0.883 3.117 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.241 1.241 7 C -0.460 4.460 8 H 0.084 0.916 9 C 0.073 3.927 10 C -0.247 4.247 11 C -0.073 4.073 12 N -0.526 5.526 13 H 0.391 0.609 14 C -0.052 4.052 15 C -0.031 4.031 16 C -0.196 4.196 17 C -0.186 4.186 18 C 0.144 3.856 19 O -0.368 6.368 20 C 0.105 3.895 21 H 0.273 0.727 22 H 0.124 0.876 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.070 -2.703 1.885 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.121 4.121 3 Si 0.711 3.289 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.164 1.164 7 C -0.494 4.494 8 H 0.102 0.898 9 C 0.066 3.934 10 C -0.257 4.257 11 C -0.187 4.187 12 N -0.122 5.122 13 H 0.225 0.775 14 C -0.160 4.160 15 C -0.050 4.050 16 C -0.234 4.234 17 C -0.224 4.224 18 C 0.066 3.934 19 O -0.287 6.287 20 C 0.029 3.971 21 H 0.083 0.917 22 H 0.142 0.858 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.001 -2.436 1.885 10.464 hybrid contribution 0.648 0.391 0.255 0.798 sum 10.649 -2.045 2.140 11.052 Atomic orbital electron populations 1.69704 1.07152 1.28353 1.44269 1.25588 0.94460 0.99829 0.92197 0.86887 0.81750 0.81878 0.78342 1.19531 1.22219 1.16447 1.18368 0.88047 0.94536 1.48466 0.89824 1.17702 0.92322 0.93071 0.90294 1.22169 0.94822 1.07278 1.01409 1.20955 0.98184 1.02236 0.97290 1.40020 1.06947 1.37034 1.28241 0.77547 1.19871 0.81393 1.11292 1.03481 1.20139 0.98595 0.91228 0.95060 1.22910 0.98724 1.06170 0.95561 1.23009 1.04072 0.94562 1.00709 1.20868 0.91377 0.88172 0.92972 1.89090 1.21404 1.37618 1.80543 1.21485 0.83652 0.95970 0.95987 0.91737 0.85806 0.90157 0.88919 0.88993 0.89561 0.91749 0.90495 0.89530 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.11 13.94 55.54 0.77 -24.34 16 2 C 0.09 2.51 5.51 -17.34 -0.10 2.42 16 3 Si 0.88 22.11 24.01 -169.99 -4.08 18.02 16 4 H -0.27 -6.40 5.91 56.52 0.33 -6.07 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.24 -6.23 6.00 56.52 0.34 -5.89 16 7 C -0.46 -12.96 9.73 -37.86 -0.37 -13.33 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.07 1.86 4.95 -104.80 -0.52 1.34 16 10 C -0.25 -5.88 4.73 -102.43 -0.48 -6.36 16 11 C -0.07 -1.52 8.22 -81.30 -0.67 -2.18 16 12 N -0.53 -10.17 5.81 -4.35 -0.03 -10.20 16 13 H 0.39 6.07 7.86 -40.82 -0.32 5.75 16 14 C -0.05 -1.15 6.81 -80.66 -0.55 -1.70 16 15 C -0.03 -0.59 6.04 -91.77 -0.55 -1.14 16 16 C -0.20 -2.88 10.13 -26.74 -0.27 -3.15 16 17 C -0.19 -2.89 10.23 -26.73 -0.27 -3.16 16 18 C 0.14 2.51 7.64 36.32 0.28 2.78 16 19 O -0.37 -7.46 11.77 -35.23 -0.41 -7.88 16 20 C 0.10 2.30 7.04 36.07 0.25 2.55 16 21 H 0.27 7.37 8.30 -40.82 -0.34 7.03 16 22 H 0.12 2.48 8.14 -51.93 -0.42 2.06 16 23 H 0.08 1.09 7.10 -51.93 -0.37 0.72 16 24 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.09 2.00 3.63 -51.93 -0.19 1.81 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 247.53 15.07 3.73 3.73 Total: -1.00 -30.53 247.53 -6.80 -37.33 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.53 Total: 5.27 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.25 Total: -21.93 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.75 Total: -34.54 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.41 Total: -7.88 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.08 Total: 18.02 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.53 -6.80 -37.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022613.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.255 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds