Wall clock time and date at job start Mon Mar 30 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38235 * 120.00496 * 2 1 4 4 C 1.38234 * 120.00494 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99857 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99846 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47422 * 338.34242 * 6 5 4 8 8 C 1.50703 * 109.47075 * 98.34265 * 6 5 4 9 9 H 1.08001 * 120.00243 * 5.14869 * 8 6 5 10 10 C 1.37878 * 119.99775 * 185.14645 * 8 6 5 11 11 N 1.31519 * 119.99735 * 189.47866 * 10 8 6 12 12 Si 1.86792 * 120.00199 * 9.48044 * 10 8 6 13 13 H 1.48497 * 109.47428 * 94.90041 * 12 10 8 14 14 H 1.48499 * 109.47339 * 214.89971 * 12 10 8 15 15 H 1.48506 * 109.47268 * 334.89694 * 12 10 8 16 16 N 1.46497 * 109.47199 * 218.34373 * 6 5 4 17 17 C 1.34776 * 120.00039 * 84.03309 * 16 6 5 18 18 O 1.21282 * 119.99806 * 355.43053 * 17 16 6 19 19 C 1.38238 * 119.99855 * 0.24977 * 5 4 3 20 20 C 1.38232 * 120.00013 * 359.49254 * 19 5 4 21 21 H 1.08996 * 109.46919 * 89.99876 * 1 2 3 22 22 H 1.09003 * 109.46969 * 209.99789 * 1 2 3 23 23 H 1.08997 * 109.47042 * 329.99733 * 1 2 3 24 24 H 1.08001 * 119.99368 * 0.02562 * 3 2 1 25 25 H 1.08004 * 119.99727 * 179.97438 * 4 3 2 26 26 H 0.96999 * 119.99407 * 179.97438 * 11 10 8 27 27 H 0.97003 * 120.00227 * 264.31885 * 16 6 5 28 28 H 1.07999 * 120.00233 * 175.41584 * 17 16 6 29 29 H 1.08004 * 119.99763 * 179.73400 * 19 5 4 30 30 H 1.08000 * 119.99795 * 180.22779 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 1 6.1418 0.9552 -0.3819 8 6 6.2822 -0.2068 1.4026 9 1 5.5845 -0.4092 2.2018 10 6 7.6334 -0.1378 1.6679 11 7 8.0914 -0.4993 2.8466 12 14 8.8135 0.4693 0.3534 13 1 9.0605 1.9214 0.5423 14 1 10.0973 -0.2692 0.4615 15 1 8.2211 0.2384 -0.9886 16 7 6.2664 -1.0829 -0.8605 17 6 6.3756 -0.8922 -2.1902 18 8 5.9928 0.1457 -2.6874 19 6 3.5805 -1.1972 -0.0074 20 6 2.1982 -1.1972 -0.0014 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6582 2.1324 0.0004 25 1 4.1206 2.1325 -0.0010 26 1 9.0420 -0.4511 3.0331 27 1 6.5068 -1.9386 -0.4719 28 1 6.8042 -1.6634 -2.8130 29 1 4.1205 -2.1325 -0.0125 30 1 1.6582 -2.1325 -0.0022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260208112.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:11 Heat of formation + Delta-G solvation = -18.962858 kcal Electronic energy + Delta-G solvation = -14491.323895 eV Core-core repulsion = 12058.178311 eV Total energy + Delta-G solvation = -2433.145584 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.16975 -37.98963 -34.83139 -32.34887 -31.88544 -30.26206 -28.45767 -25.73892 -22.69231 -22.13134 -20.95963 -19.55164 -17.78606 -16.28481 -15.80088 -15.29563 -14.57711 -14.39664 -13.84314 -13.59834 -13.39753 -12.87225 -12.78271 -12.59249 -12.05026 -11.70316 -11.67261 -11.09886 -11.00994 -10.40873 -10.19461 -10.01756 -9.70233 -9.18410 -8.75349 -8.28109 -8.08015 -7.72499 -6.34901 -4.41360 2.04116 2.06480 3.18261 3.27296 3.37454 3.57400 4.22596 4.26106 4.52311 5.14877 5.30468 5.32568 5.58129 5.70135 5.73116 5.80765 5.89268 6.05085 6.20932 6.27441 6.57241 6.70184 6.84506 7.09765 7.13759 7.27530 7.30478 7.63549 7.68384 8.12774 8.58279 8.73991 9.07278 9.26174 10.74828 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033762 B = 0.009724 C = 0.008578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.126629 B = 2878.731219 C = 3263.329625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.115 4.115 3 C -0.123 4.123 4 C -0.111 4.111 5 C -0.042 4.042 6 C 0.264 3.736 7 H 0.055 0.945 8 C -0.525 4.525 9 H 0.082 0.918 10 C 0.086 3.914 11 N -0.877 5.877 12 Si 0.873 3.127 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.249 1.249 16 N -0.717 5.717 17 C 0.478 3.522 18 O -0.575 6.575 19 C -0.106 4.106 20 C -0.126 4.126 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.269 0.731 27 H 0.394 0.606 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 -2.149 -5.661 9.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.115 4.115 3 C -0.141 4.141 4 C -0.129 4.129 5 C -0.043 4.043 6 C 0.163 3.837 7 H 0.073 0.927 8 C -0.563 4.563 9 H 0.100 0.900 10 C -0.120 4.120 11 N -0.512 5.512 12 Si 0.699 3.301 13 H -0.205 1.205 14 H -0.214 1.214 15 H -0.172 1.172 16 N -0.369 5.369 17 C 0.246 3.754 18 O -0.453 6.453 19 C -0.124 4.124 20 C -0.144 4.144 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.130 0.870 25 H 0.135 0.865 26 H 0.079 0.921 27 H 0.229 0.771 28 H 0.118 0.882 29 H 0.134 0.866 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.878 -1.423 -5.889 9.938 hybrid contribution 0.977 -0.166 -0.265 1.025 sum -6.902 -1.589 -6.153 9.382 Atomic orbital electron populations 1.20681 0.92122 1.01973 1.01442 1.19698 0.95281 0.93465 1.03030 1.20860 0.94197 0.96887 1.02196 1.20964 0.93671 0.98054 1.00230 1.20412 0.97185 0.92533 0.94213 1.18024 0.86381 0.88333 0.90987 0.92682 1.21016 0.93137 1.50834 0.91325 0.89988 1.25053 0.98254 0.93257 0.95462 1.69939 1.14822 1.44216 1.22262 0.86925 0.80096 0.79348 0.83729 1.20512 1.21360 1.17226 1.47909 1.64227 1.17585 1.07223 1.22365 0.79041 0.90132 0.83881 1.90619 1.50059 1.30473 1.74173 1.20868 0.93346 0.98038 1.00195 1.20882 0.94343 0.96807 1.02405 0.92038 0.92186 0.92169 0.87029 0.86544 0.92136 0.77130 0.88157 0.86622 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 36.01 0.36 -0.95 16 2 C -0.11 -1.88 5.88 -104.62 -0.62 -2.50 16 3 C -0.12 -2.15 9.70 -39.58 -0.38 -2.54 16 4 C -0.11 -2.23 9.67 -39.58 -0.38 -2.61 16 5 C -0.04 -0.90 4.85 -104.62 -0.51 -1.41 16 6 C 0.26 6.05 1.41 -70.23 -0.10 5.95 16 7 H 0.06 1.38 6.38 -51.93 -0.33 1.05 16 8 C -0.53 -13.65 9.10 -34.44 -0.31 -13.96 16 9 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 10 C 0.09 2.29 5.46 -17.82 -0.10 2.19 16 11 N -0.88 -24.82 13.96 55.43 0.77 -24.05 16 12 Si 0.87 20.41 26.87 -169.99 -4.57 15.84 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 15 H -0.25 -5.67 4.82 56.52 0.27 -5.40 16 16 N -0.72 -14.26 2.76 -60.42 -0.17 -14.43 16 17 C 0.48 9.22 11.23 54.05 0.61 9.82 16 18 O -0.57 -13.52 16.90 5.56 0.09 -13.43 16 19 C -0.11 -2.05 9.32 -39.58 -0.37 -2.42 16 20 C -0.13 -2.16 9.70 -39.58 -0.38 -2.54 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 23 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 24 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 25 H 0.12 2.26 8.05 -52.48 -0.42 1.84 16 26 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 27 H 0.39 7.04 8.70 -40.82 -0.36 6.68 16 28 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.12 2.10 7.66 -52.48 -0.40 1.69 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 261.41 15.07 3.94 3.94 Total: -1.00 -31.02 261.41 -5.84 -36.85 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.72 Total: 6.23 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.18 Total: -10.96 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.61 Total: -38.48 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.57 Total: 15.84 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.02 -5.84 -36.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260208112.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.890 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds