Wall clock time and date at job start Mon Mar 30 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38235 * 120.00496 * 2 1 4 4 C 1.38234 * 120.00494 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99857 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99846 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47422 * 338.34242 * 6 5 4 8 8 C 1.50703 * 109.47075 * 98.34265 * 6 5 4 9 9 H 1.08001 * 120.00243 * 5.14869 * 8 6 5 10 10 C 1.37878 * 119.99775 * 185.14645 * 8 6 5 11 11 N 1.31519 * 119.99735 * 189.47866 * 10 8 6 12 12 Si 1.86792 * 120.00199 * 9.48044 * 10 8 6 13 13 H 1.48497 * 109.47428 * 94.90041 * 12 10 8 14 14 H 1.48499 * 109.47339 * 214.89971 * 12 10 8 15 15 H 1.48506 * 109.47268 * 334.89694 * 12 10 8 16 16 N 1.46497 * 109.47199 * 218.34373 * 6 5 4 17 17 C 1.34776 * 120.00039 * 84.03309 * 16 6 5 18 18 O 1.21282 * 119.99806 * 355.43053 * 17 16 6 19 19 C 1.38238 * 119.99855 * 0.24977 * 5 4 3 20 20 C 1.38232 * 120.00013 * 359.49254 * 19 5 4 21 21 H 1.08996 * 109.46919 * 89.99876 * 1 2 3 22 22 H 1.09003 * 109.46969 * 209.99789 * 1 2 3 23 23 H 1.08997 * 109.47042 * 329.99733 * 1 2 3 24 24 H 1.08001 * 119.99368 * 0.02562 * 3 2 1 25 25 H 1.08004 * 119.99727 * 179.97438 * 4 3 2 26 26 H 0.96999 * 119.99407 * 179.97438 * 11 10 8 27 27 H 0.97003 * 120.00227 * 264.31885 * 16 6 5 28 28 H 1.07999 * 120.00233 * 175.41584 * 17 16 6 29 29 H 1.08004 * 119.99763 * 179.73400 * 19 5 4 30 30 H 1.08000 * 119.99795 * 180.22779 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2718 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 1 6.1418 0.9552 -0.3819 8 6 6.2822 -0.2068 1.4026 9 1 5.5845 -0.4092 2.2018 10 6 7.6334 -0.1378 1.6679 11 7 8.0914 -0.4993 2.8466 12 14 8.8135 0.4693 0.3534 13 1 9.0605 1.9214 0.5423 14 1 10.0973 -0.2692 0.4615 15 1 8.2211 0.2384 -0.9886 16 7 6.2664 -1.0829 -0.8605 17 6 6.3756 -0.8922 -2.1902 18 8 5.9928 0.1457 -2.6874 19 6 3.5805 -1.1972 -0.0074 20 6 2.1982 -1.1972 -0.0014 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6582 2.1324 0.0004 25 1 4.1206 2.1325 -0.0010 26 1 9.0420 -0.4511 3.0331 27 1 6.5068 -1.9386 -0.4719 28 1 6.8042 -1.6634 -2.8130 29 1 4.1205 -2.1325 -0.0125 30 1 1.6582 -2.1325 -0.0022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260208112.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:11 Heat of formation + Delta-G solvation = -39.139056 kcal Electronic energy + Delta-G solvation = -14492.198800 eV Core-core repulsion = 12058.178311 eV Total energy + Delta-G solvation = -2434.020489 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70948 -39.51596 -36.53535 -34.30390 -33.30561 -31.67649 -30.09466 -27.25806 -24.40457 -23.56680 -22.44229 -21.10680 -19.61932 -18.08389 -17.37516 -16.93922 -16.11728 -15.93932 -15.43119 -15.20067 -14.76053 -14.51311 -14.18134 -14.16073 -13.64638 -13.16758 -12.96701 -12.89174 -12.54838 -11.95420 -11.78269 -11.71846 -11.65195 -10.93091 -10.72994 -9.79151 -9.67624 -9.18265 -8.42091 -6.51910 0.60929 0.63006 1.29354 1.37786 1.49330 1.99132 2.29381 2.62275 3.00944 3.25399 4.05379 4.09899 4.24794 4.27855 4.38756 4.55057 4.76208 4.88378 4.90643 4.96997 5.04883 5.30341 5.31167 5.40462 5.64324 5.70733 5.78206 6.02013 6.13625 6.29720 6.59067 6.97019 7.18288 7.53858 8.71717 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.033762 B = 0.009724 C = 0.008578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.126629 B = 2878.731219 C = 3263.329625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.111 4.111 3 C -0.127 4.127 4 C -0.137 4.137 5 C -0.078 4.078 6 C 0.276 3.724 7 H 0.029 0.971 8 C -0.523 4.523 9 H 0.042 0.958 10 C 0.044 3.956 11 N -0.922 5.922 12 Si 0.937 3.063 13 H -0.290 1.290 14 H -0.278 1.278 15 H -0.240 1.240 16 N -0.714 5.714 17 C 0.478 3.522 18 O -0.617 6.617 19 C -0.119 4.119 20 C -0.129 4.129 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.139 0.861 25 H 0.108 0.892 26 H 0.272 0.728 27 H 0.406 0.594 28 H 0.168 0.832 29 H 0.121 0.879 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -2.991 -7.243 12.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.111 4.111 3 C -0.145 4.145 4 C -0.156 4.156 5 C -0.079 4.079 6 C 0.173 3.827 7 H 0.047 0.953 8 C -0.561 4.561 9 H 0.060 0.940 10 C -0.158 4.158 11 N -0.559 5.559 12 Si 0.762 3.238 13 H -0.217 1.217 14 H -0.204 1.204 15 H -0.163 1.163 16 N -0.366 5.366 17 C 0.248 3.752 18 O -0.498 6.498 19 C -0.137 4.137 20 C -0.146 4.146 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.156 0.844 25 H 0.126 0.874 26 H 0.081 0.919 27 H 0.242 0.758 28 H 0.184 0.816 29 H 0.139 0.861 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.206 -2.296 -7.476 12.079 hybrid contribution 1.245 0.084 0.243 1.271 sum -7.961 -2.212 -7.232 10.981 Atomic orbital electron populations 1.20755 0.88718 1.03535 1.02935 1.20243 0.97746 0.92636 1.00462 1.21196 0.93162 0.98836 1.01326 1.21127 0.95293 0.97506 1.01645 1.20404 0.96367 0.94021 0.97117 1.17576 0.87858 0.88002 0.89244 0.95292 1.21030 0.92531 1.50305 0.92233 0.93975 1.25691 0.99685 0.93307 0.97147 1.70038 1.15374 1.46248 1.24269 0.85934 0.78323 0.77955 0.81626 1.21702 1.20378 1.16276 1.47566 1.64132 1.17241 1.07700 1.23368 0.77852 0.90566 0.83416 1.90613 1.51806 1.32732 1.74697 1.21025 0.94689 0.97408 1.00553 1.21279 0.93551 0.98637 1.01175 0.90389 0.90559 0.90804 0.84360 0.87394 0.91887 0.75798 0.81640 0.86126 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 10.01 71.24 0.71 -1.41 16 2 C -0.11 -3.35 5.88 -19.86 -0.12 -3.46 16 3 C -0.13 -4.28 9.70 22.27 0.22 -4.06 16 4 C -0.14 -5.62 9.67 22.27 0.22 -5.40 16 5 C -0.08 -3.39 4.85 -19.87 -0.10 -3.48 16 6 C 0.28 12.89 1.41 43.50 0.06 12.95 16 7 H 0.03 1.50 6.38 -2.39 -0.02 1.48 16 8 C -0.52 -28.13 9.10 25.60 0.23 -27.90 16 9 H 0.04 2.56 7.99 -2.91 -0.02 2.53 16 10 C 0.04 2.38 5.46 84.65 0.46 2.84 16 11 N -0.92 -53.53 13.96 21.45 0.30 -53.24 16 12 Si 0.94 42.80 26.87 68.60 1.84 44.64 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 14 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 15 H -0.24 -10.46 4.82 99.48 0.48 -9.98 16 16 N -0.71 -27.67 2.76 -463.45 -1.28 -28.95 16 17 C 0.48 17.31 11.23 129.79 1.46 18.77 16 18 O -0.62 -28.33 16.90 -3.04 -0.05 -28.39 16 19 C -0.12 -4.51 9.32 22.27 0.21 -4.30 16 20 C -0.13 -4.11 9.70 22.27 0.22 -3.89 16 21 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 23 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 24 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 25 H 0.11 4.41 8.05 -2.91 -0.02 4.39 16 26 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.41 13.97 8.70 -92.71 -0.81 13.17 16 28 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 29 H 0.12 4.30 7.66 -2.91 -0.02 4.28 16 30 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -69.12 261.41 4.49 -64.64 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.10 Total: 20.65 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 3.57 Total: -19.36 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -0.98 Total: -82.19 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.05 Total: -28.39 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.84 Total: 44.64 kcal Total: -69.12 4.49 -64.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260208112.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.497 kcal (2) G-P(sol) polarization free energy of solvation -69.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds