Wall clock time and date at job start Mon Mar 30 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38238 * 120.00140 * 2 1 4 4 C 1.38236 * 120.00160 * 179.97438 * 3 2 1 5 5 C 1.38238 * 119.99939 * 359.96763 * 4 3 2 6 6 C 1.50696 * 119.99936 * 180.02562 * 5 4 3 7 7 H 1.09008 * 109.46893 * 269.51519 * 6 5 4 8 8 C 1.50692 * 109.47260 * 149.51555 * 6 5 4 9 9 H 1.08003 * 119.99885 * 359.97438 * 8 6 5 10 10 C 1.37878 * 120.00399 * 179.97438 * 8 6 5 11 11 N 1.31515 * 119.99840 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 120.00311 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47186 * 59.99941 * 12 10 8 14 14 H 1.48495 * 109.47204 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47080 * 299.99943 * 12 10 8 16 16 N 1.46497 * 109.47167 * 29.51305 * 6 5 4 17 17 C 1.34769 * 120.00151 * 63.74940 * 16 6 5 18 18 O 1.21286 * 119.99825 * 4.61911 * 17 16 6 19 19 C 1.38235 * 119.99968 * 0.28366 * 5 4 3 20 20 C 1.38233 * 119.99675 * 359.51187 * 19 5 4 21 21 H 1.08995 * 109.47288 * 89.99981 * 1 2 3 22 22 H 1.09000 * 109.47198 * 210.00824 * 1 2 3 23 23 H 1.09006 * 109.46924 * 329.99995 * 1 2 3 24 24 H 1.07998 * 119.99853 * 359.97184 * 3 2 1 25 25 H 1.07999 * 120.00087 * 179.97438 * 4 3 2 26 26 H 0.97002 * 120.00188 * 179.97438 * 11 10 8 27 27 H 0.97003 * 119.99883 * 243.74858 * 16 6 5 28 28 H 1.08001 * 120.00450 * 184.62261 * 17 16 6 29 29 H 1.07999 * 119.99894 * 179.72588 * 19 5 4 30 30 H 1.08010 * 119.99663 * 180.27712 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0017 6 6 5.7787 0.0000 0.0029 7 1 6.1428 -0.0093 -1.0245 8 6 6.2805 -1.2239 0.7247 9 1 5.5783 -1.9309 1.1414 10 6 7.6359 -1.4413 0.8533 11 7 8.4909 -0.5802 0.3464 12 14 8.2579 -2.9581 1.7487 13 1 7.7628 -4.1772 1.0602 14 1 9.7428 -2.9582 1.7497 15 1 7.7624 -2.9445 3.1486 16 7 6.2665 1.2023 0.6830 17 6 6.0034 1.3901 1.9914 18 8 5.4360 0.5261 2.6259 19 6 3.5805 -1.1972 -0.0035 20 6 2.1982 -1.1971 0.0002 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5140 23 1 -0.3633 0.8900 0.5139 24 1 1.6582 2.1325 -0.0005 25 1 4.1205 2.1325 0.0001 26 1 9.4446 -0.7328 0.4371 27 1 6.7788 1.8634 0.1916 28 1 6.2978 2.3098 2.4749 29 1 4.1205 -2.1324 -0.0070 30 1 1.6582 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260208118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:14 Heat of formation + Delta-G solvation = -33.274271 kcal Electronic energy + Delta-G solvation = -14662.428255 eV Core-core repulsion = 12228.662081 eV Total energy + Delta-G solvation = -2433.766173 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59189 -39.16179 -36.16031 -33.96312 -33.13305 -31.63383 -29.61041 -27.02058 -24.84396 -23.32468 -22.27493 -20.95958 -18.79428 -18.27845 -17.35537 -16.35688 -16.08989 -15.68875 -15.24239 -14.80083 -14.58283 -14.18481 -14.15338 -14.07461 -13.61002 -13.00896 -12.87429 -12.76023 -12.48525 -12.09501 -11.86008 -11.52202 -11.31656 -10.79573 -10.30702 -9.63103 -9.39126 -9.07913 -8.12280 -6.17452 0.67842 0.70412 1.35535 1.38524 1.45497 2.35685 2.43323 2.91122 3.14393 3.40053 4.13590 4.15568 4.32246 4.40371 4.58604 4.69967 4.84014 4.92171 5.00907 5.07725 5.16803 5.34798 5.45395 5.72392 5.75996 5.84117 5.88500 6.18602 6.34234 6.39864 6.80011 7.23651 7.48212 7.98397 8.92244 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.036825 B = 0.009584 C = 0.008516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.171076 B = 2920.977118 C = 3287.296555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.113 4.113 3 C -0.129 4.129 4 C -0.128 4.128 5 C -0.077 4.077 6 C 0.296 3.704 7 H 0.040 0.960 8 C -0.504 4.504 9 H 0.043 0.957 10 C 0.027 3.973 11 N -0.904 5.904 12 Si 0.939 3.061 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.292 1.292 16 N -0.693 5.693 17 C 0.480 3.520 18 O -0.599 6.599 19 C -0.124 4.124 20 C -0.134 4.134 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.141 0.859 25 H 0.122 0.878 26 H 0.260 0.740 27 H 0.394 0.606 28 H 0.143 0.857 29 H 0.108 0.892 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.793 5.227 -2.571 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.113 4.113 3 C -0.147 4.147 4 C -0.146 4.146 5 C -0.078 4.078 6 C 0.193 3.807 7 H 0.058 0.942 8 C -0.543 4.543 9 H 0.061 0.939 10 C -0.173 4.173 11 N -0.544 5.544 12 Si 0.767 3.233 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.218 1.218 16 N -0.342 5.342 17 C 0.248 3.752 18 O -0.478 6.478 19 C -0.143 4.143 20 C -0.152 4.152 21 H 0.098 0.902 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.159 0.841 25 H 0.140 0.860 26 H 0.069 0.931 27 H 0.228 0.772 28 H 0.158 0.842 29 H 0.126 0.874 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.015 4.656 -2.157 11.254 hybrid contribution 1.286 -0.654 0.393 1.495 sum -8.730 4.003 -1.764 9.764 Atomic orbital electron populations 1.20739 0.88908 1.03257 1.02948 1.20205 0.97599 0.92687 1.00826 1.21222 0.93627 0.98386 1.01482 1.21094 0.94741 0.97423 1.01378 1.20598 0.96940 0.93629 0.96622 1.17317 0.85974 0.84756 0.92635 0.94217 1.21429 0.91392 1.06406 1.35112 0.93895 1.25467 0.97221 0.98662 0.95963 1.69963 1.01911 1.36566 1.45974 0.85908 0.77132 0.81403 0.78892 1.19439 1.20462 1.21811 1.46577 1.53794 1.23015 1.10832 1.22731 0.78876 0.91308 0.82295 1.90609 1.44623 1.47850 1.64705 1.21182 0.94593 0.98165 1.00337 1.21225 0.93444 0.98639 1.01876 0.90182 0.91221 0.90693 0.84142 0.85968 0.93107 0.77229 0.84197 0.87384 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.21 10.01 71.23 0.71 -1.50 16 2 C -0.11 -3.54 5.88 -19.87 -0.12 -3.66 16 3 C -0.13 -4.18 9.70 22.27 0.22 -3.96 16 4 C -0.13 -4.84 8.85 22.27 0.20 -4.65 16 5 C -0.08 -3.41 4.65 -19.87 -0.09 -3.51 16 6 C 0.30 14.45 2.90 43.50 0.13 14.58 16 7 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 8 C -0.50 -28.11 6.34 25.60 0.16 -27.95 16 9 H 0.04 2.53 6.08 -2.91 -0.02 2.51 16 10 C 0.03 1.51 5.39 84.65 0.46 1.96 16 11 N -0.90 -49.78 12.77 21.45 0.27 -49.51 16 12 Si 0.94 45.62 29.54 68.60 2.03 47.65 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 15 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16 16 N -0.69 -29.56 3.62 -463.46 -1.68 -31.23 16 17 C 0.48 20.73 11.52 129.79 1.50 22.22 16 18 O -0.60 -32.23 15.38 -3.05 -0.05 -32.28 16 19 C -0.12 -5.39 8.88 22.27 0.20 -5.19 16 20 C -0.13 -4.77 9.70 22.27 0.22 -4.56 16 21 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 23 H 0.07 1.41 8.09 -2.38 -0.02 1.39 16 24 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 25 H 0.12 4.19 7.34 -2.91 -0.02 4.17 16 26 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 27 H 0.39 14.51 8.94 -92.71 -0.83 13.68 16 28 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.11 4.97 6.48 -2.91 -0.02 4.95 16 30 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -67.79 260.22 4.46 -63.32 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.32 Total: 18.25 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 3.57 Total: -16.21 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -1.40 Total: -80.74 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.05 Total: -32.28 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -67.79 4.46 -63.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260208118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.048 kcal (2) G-P(sol) polarization free energy of solvation -67.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds