Wall clock time and date at job start Mon Mar 30 2020 03:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38256 * 119.99393 * 2 1 4 4 C 1.38224 * 119.99741 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99769 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99940 * 359.81398 * 5 4 3 7 7 C 1.38212 * 120.00131 * 180.02562 * 2 1 3 8 8 C 1.50700 * 119.99986 * 359.97438 * 7 2 1 9 9 H 1.09002 * 109.47260 * 43.03567 * 8 7 2 10 10 C 1.50700 * 109.47060 * 163.03890 * 8 7 2 11 11 H 1.07999 * 120.00137 * 354.79322 * 10 8 7 12 12 C 1.37872 * 119.99650 * 174.78495 * 10 8 7 13 13 N 1.31513 * 120.00606 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 119.99717 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47152 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47252 * 120.00064 * 14 12 10 17 17 H 1.48504 * 109.47243 * 239.99869 * 14 12 10 18 18 N 1.46501 * 109.46785 * 283.03933 * 8 7 2 19 19 C 1.34776 * 120.00152 * 304.34787 * 18 8 7 20 20 O 1.21283 * 119.99700 * 354.70462 * 19 18 8 21 21 H 1.09004 * 109.46936 * 269.97492 * 1 2 3 22 22 H 1.09002 * 109.47202 * 29.97762 * 1 2 3 23 23 H 1.09001 * 109.46914 * 149.97559 * 1 2 3 24 24 H 1.07994 * 120.00828 * 0.02562 * 3 2 1 25 25 H 1.07998 * 119.99867 * 180.02562 * 4 3 2 26 26 H 1.08002 * 119.99782 * 180.02562 * 5 4 3 27 27 H 1.08006 * 119.99979 * 180.22966 * 6 5 4 28 28 H 0.96998 * 120.00289 * 179.97438 * 13 12 10 29 29 H 0.97001 * 119.99856 * 124.35119 * 18 8 7 30 30 H 1.08001 * 120.00097 * 174.97998 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0016 6 6 3.5807 -1.1968 0.0060 7 6 2.1981 -1.1969 -0.0005 8 6 1.4447 -2.5020 -0.0005 9 1 0.6122 -2.4410 -0.7015 10 6 2.3703 -3.6165 -0.4156 11 1 3.3767 -3.3913 -0.7362 12 6 1.9323 -4.9234 -0.3859 13 7 0.7070 -5.1977 0.0052 14 14 3.0799 -6.3049 -0.8997 15 1 4.3939 -5.7361 -1.2937 16 1 3.2664 -7.2422 0.2369 17 1 2.4916 -7.0346 -2.0516 18 7 0.9312 -2.7694 1.3452 19 6 1.7757 -2.7994 2.3951 20 8 2.9710 -2.7009 2.2148 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6583 2.1327 0.0004 25 1 4.1203 2.1328 0.0010 26 1 5.3518 0.0002 0.0024 27 1 4.1207 -2.1321 0.0106 28 1 0.3988 -6.1172 0.0257 29 1 -0.0167 -2.9249 1.4807 30 1 1.3884 -2.9155 3.3966 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260218270.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:17 Heat of formation + Delta-G solvation = -9.526423 kcal Electronic energy + Delta-G solvation = -14976.417653 eV Core-core repulsion = 12543.681263 eV Total energy + Delta-G solvation = -2432.736389 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.08575 -37.34350 -34.17203 -32.23342 -31.50869 -30.41716 -26.91538 -25.86513 -23.64757 -21.26589 -20.69078 -19.15825 -16.96898 -16.42231 -15.78732 -14.51235 -14.34251 -14.23980 -13.62429 -13.31001 -12.93609 -12.45047 -12.35050 -12.21249 -11.75227 -11.65310 -11.27394 -10.93289 -10.76922 -10.44927 -10.13740 -9.73498 -9.29913 -8.78219 -8.46935 -7.89030 -7.66475 -7.46882 -6.08295 -4.10927 2.15133 2.26923 3.28924 3.37325 3.43192 4.12291 4.42183 4.51424 4.95297 5.36957 5.49240 5.59939 5.74222 5.84883 6.03150 6.12469 6.24185 6.30773 6.41184 6.60540 6.84956 6.89576 7.09865 7.22439 7.39560 7.65508 7.84617 7.91494 8.04556 8.23980 8.83809 9.02765 9.55331 9.68112 10.98864 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.032768 B = 0.011065 C = 0.010143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.288339 B = 2529.811845 C = 2759.806866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.147 4.147 6 C -0.058 4.058 7 C -0.062 4.062 8 C 0.298 3.702 9 H 0.052 0.948 10 C -0.509 4.509 11 H 0.067 0.933 12 C 0.070 3.930 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.286 1.286 18 N -0.690 5.690 19 C 0.484 3.516 20 O -0.557 6.557 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.136 0.864 28 H 0.259 0.741 29 H 0.383 0.617 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 7.918 1.176 8.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.159 4.159 4 C -0.153 4.153 5 C -0.165 4.165 6 C -0.076 4.076 7 C -0.063 4.063 8 C 0.197 3.803 9 H 0.070 0.930 10 C -0.548 4.548 11 H 0.085 0.915 12 C -0.132 4.132 13 N -0.527 5.527 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.212 1.212 18 N -0.339 5.339 19 C 0.250 3.750 20 O -0.434 6.434 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.154 0.846 28 H 0.068 0.932 29 H 0.215 0.785 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.845 7.860 1.069 7.977 hybrid contribution 0.099 -0.994 -0.009 0.999 sum -0.746 6.866 1.060 6.988 Atomic orbital electron populations 1.20745 0.92149 1.02092 1.01548 1.19825 0.95586 0.93028 1.01023 1.20763 0.94139 0.96762 1.04266 1.20879 0.94258 0.97291 1.02861 1.21129 0.99100 0.93103 1.03188 1.21416 0.94510 0.97788 0.93925 1.20473 0.94325 0.95093 0.96377 1.17499 0.93432 0.88022 0.81377 0.93029 1.21509 0.99354 0.90837 1.43073 0.91497 1.24920 0.94989 0.98745 0.94581 1.69915 1.16137 1.19246 1.47396 0.86508 0.81316 0.82046 0.77948 1.19673 1.21183 1.21183 1.46632 1.09950 1.69054 1.08306 1.21843 0.87370 0.77285 0.88489 1.90587 1.16317 1.49529 1.86929 0.92010 0.92848 0.91030 0.87549 0.87611 0.87438 0.84605 0.93173 0.78507 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.58 36.01 0.34 -1.38 16 2 C -0.09 -1.80 5.88 -104.62 -0.62 -2.41 16 3 C -0.14 -2.46 9.70 -39.58 -0.38 -2.85 16 4 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 5 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 6 C -0.06 -1.30 7.34 -39.58 -0.29 -1.59 16 7 C -0.06 -1.36 4.46 -104.62 -0.47 -1.82 16 8 C 0.30 7.02 2.14 -70.23 -0.15 6.87 16 9 H 0.05 1.25 6.57 -51.93 -0.34 0.91 16 10 C -0.51 -13.59 7.01 -34.44 -0.24 -13.83 16 11 H 0.07 1.84 5.50 -52.49 -0.29 1.55 16 12 C 0.07 1.89 5.37 -17.82 -0.10 1.80 16 13 N -0.89 -23.80 12.52 55.43 0.69 -23.11 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 N -0.69 -14.85 4.21 -60.41 -0.25 -15.10 16 19 C 0.48 10.62 12.04 54.05 0.65 11.27 16 20 O -0.56 -14.31 13.95 5.56 0.08 -14.23 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 22 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 23 H 0.07 1.19 6.19 -51.93 -0.32 0.87 16 24 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 25 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 26 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.14 3.33 5.58 -52.48 -0.29 3.03 16 28 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.38 7.43 8.94 -40.82 -0.36 7.06 16 30 H 0.09 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 254.70 15.07 3.84 3.84 Total: -1.00 -29.84 254.70 -5.99 -35.83 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -3.28 Total: 6.18 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -2.04 Total: -9.92 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.44 Total: -38.21 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.08 Total: -14.23 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.84 -5.99 -35.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218270.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.301 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds