Wall clock time and date at job start Mon Mar 30 2020 03:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99776 * 2 1 4 4 C 1.38215 * 119.99779 * 180.21051 * 3 2 1 5 5 C 1.38252 * 119.99886 * 359.86080 * 4 3 2 6 6 C 1.38212 * 120.00475 * 359.95431 * 5 4 3 7 7 C 1.38210 * 120.00263 * 179.81975 * 2 1 3 8 8 C 1.50702 * 120.00290 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.46580 * 318.13006 * 8 7 2 10 10 C 1.50691 * 109.47483 * 198.12611 * 8 7 2 11 11 H 1.08003 * 120.00118 * 355.49614 * 10 8 7 12 12 C 1.37874 * 120.00277 * 175.49616 * 10 8 7 13 13 N 1.31519 * 119.99842 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00137 * 179.72194 * 12 10 8 15 15 H 1.48495 * 109.47393 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47076 * 120.00231 * 14 12 10 17 17 H 1.48497 * 109.47339 * 240.00061 * 14 12 10 18 18 N 1.46504 * 109.46809 * 78.12266 * 8 7 2 19 19 C 1.34777 * 120.00113 * 65.42559 * 18 8 7 20 20 O 1.21288 * 119.99885 * 355.06809 * 19 18 8 21 21 H 1.09001 * 109.46838 * 270.17816 * 1 2 3 22 22 H 1.08998 * 109.47539 * 30.18117 * 1 2 3 23 23 H 1.09006 * 109.46843 * 150.18604 * 1 2 3 24 24 H 1.08002 * 119.99995 * 0.05141 * 3 2 1 25 25 H 1.08005 * 119.99836 * 179.83834 * 4 3 2 26 26 H 1.08005 * 119.99361 * 179.97438 * 5 4 3 27 27 H 1.07999 * 120.00005 * 179.97438 * 6 5 4 28 28 H 0.96995 * 119.99605 * 179.97438 * 13 12 10 29 29 H 0.96998 * 119.99981 * 245.41864 * 18 8 7 30 30 H 1.07996 * 120.00361 * 175.07068 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0044 5 6 4.2717 0.0001 -0.0059 6 6 3.5807 -1.1969 -0.0020 7 6 2.1981 -1.1969 0.0038 8 6 1.4447 -2.5021 0.0085 9 1 0.6006 -2.4318 0.6945 10 6 2.3631 -3.6107 0.4538 11 1 3.4074 -3.4056 0.6380 12 6 1.8704 -4.8868 0.6262 13 7 0.5988 -5.1366 0.4014 14 14 3.0105 -6.2626 1.1708 15 1 4.3836 -5.7262 1.3493 16 1 2.5281 -6.8250 2.4577 17 1 3.0259 -7.3304 0.1389 18 7 0.9539 -2.7874 -1.3421 19 6 1.8276 -3.0262 -2.3402 20 8 3.0192 -2.9172 -2.1421 21 1 -0.3633 0.0032 1.0277 22 1 -0.3634 0.8883 -0.5166 23 1 -0.3633 -0.8917 -0.5110 24 1 1.6582 2.1327 0.0008 25 1 4.1204 2.1328 -0.0070 26 1 5.3517 0.0002 -0.0097 27 1 4.1207 -2.1322 -0.0036 28 1 0.2523 -6.0344 0.5223 29 1 0.0001 -2.8045 -1.5180 30 1 1.4666 -3.3145 -3.3164 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260218275.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:21 Heat of formation + Delta-G solvation = -10.550589 kcal Electronic energy + Delta-G solvation = -14938.986416 eV Core-core repulsion = 12506.205616 eV Total energy + Delta-G solvation = -2432.780800 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.08010 -37.38631 -34.17240 -32.26408 -31.56389 -30.41887 -26.92915 -25.84499 -23.68910 -21.25729 -20.67996 -19.23772 -17.03272 -16.36540 -15.80698 -14.51641 -14.36189 -14.21279 -13.68913 -13.21542 -12.97913 -12.49716 -12.42976 -12.20537 -11.79779 -11.58518 -11.24307 -10.94026 -10.79022 -10.46048 -10.19448 -9.77176 -9.18390 -8.83220 -8.46872 -7.90481 -7.68841 -7.50577 -6.10861 -4.12693 2.14078 2.26136 3.28376 3.36772 3.43511 4.09621 4.41127 4.48568 4.93235 5.38461 5.48634 5.59307 5.73814 5.83779 6.04584 6.13330 6.20640 6.32283 6.39168 6.60114 6.81959 6.89230 7.11576 7.21833 7.38861 7.65281 7.83565 7.91500 8.02519 8.21562 8.85423 8.99679 9.53640 9.64739 10.97253 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.010965 C = 0.010172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.744975 B = 2552.860613 C = 2752.082984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.065 4.065 7 C -0.061 4.061 8 C 0.297 3.703 9 H 0.057 0.943 10 C -0.505 4.505 11 H 0.069 0.931 12 C 0.069 3.931 13 N -0.887 5.887 14 Si 0.894 3.106 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.285 1.285 18 N -0.701 5.701 19 C 0.488 3.512 20 O -0.554 6.554 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.137 0.863 28 H 0.259 0.741 29 H 0.377 0.623 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.309 7.772 -1.841 8.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.158 4.158 4 C -0.154 4.154 5 C -0.164 4.164 6 C -0.083 4.083 7 C -0.062 4.062 8 C 0.196 3.804 9 H 0.075 0.925 10 C -0.543 4.543 11 H 0.087 0.913 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.212 1.212 18 N -0.351 5.351 19 C 0.254 3.746 20 O -0.431 6.431 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.155 0.845 28 H 0.069 0.931 29 H 0.209 0.791 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.580 7.687 -1.691 7.892 hybrid contribution 0.045 -0.930 0.080 0.934 sum -0.535 6.757 -1.611 6.967 Atomic orbital electron populations 1.20746 0.92160 1.01976 1.01680 1.19834 0.95576 0.93040 1.01069 1.20770 0.94143 0.96770 1.04132 1.20878 0.94257 0.97297 1.02983 1.21135 0.99107 0.93101 1.03062 1.21454 0.94582 0.97844 0.94393 1.20556 0.94334 0.95254 0.96043 1.17526 0.93872 0.87963 0.81011 0.92516 1.21481 0.96080 0.93059 1.43723 0.91286 1.24974 0.94996 0.98766 0.94715 1.69943 1.12781 1.21017 1.48793 0.86498 0.81390 0.81973 0.77946 1.19596 1.21137 1.21154 1.46948 1.08232 1.69280 1.10594 1.21828 0.87133 0.77647 0.87944 1.90577 1.16970 1.51310 1.84231 0.91845 0.92780 0.91232 0.87528 0.87593 0.87425 0.84498 0.93100 0.79100 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.28 36.01 0.33 -1.40 16 2 C -0.09 -1.81 5.88 -104.62 -0.62 -2.42 16 3 C -0.14 -2.44 9.70 -39.58 -0.38 -2.82 16 4 C -0.14 -2.36 10.05 -39.58 -0.40 -2.76 16 5 C -0.15 -2.80 10.05 -39.59 -0.40 -3.20 16 6 C -0.06 -1.44 7.61 -39.58 -0.30 -1.74 16 7 C -0.06 -1.34 4.72 -104.62 -0.49 -1.83 16 8 C 0.30 7.02 1.78 -70.24 -0.13 6.90 16 9 H 0.06 1.40 7.39 -51.93 -0.38 1.01 16 10 C -0.50 -13.50 6.66 -34.45 -0.23 -13.73 16 11 H 0.07 1.91 5.29 -52.48 -0.28 1.63 16 12 C 0.07 1.84 5.41 -17.82 -0.10 1.75 16 13 N -0.89 -23.94 12.97 55.43 0.72 -23.22 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 N -0.70 -14.94 4.23 -60.42 -0.26 -15.19 16 19 C 0.49 10.63 12.05 54.06 0.65 11.28 16 20 O -0.55 -14.14 13.95 5.55 0.08 -14.06 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 23 H 0.07 1.13 5.96 -51.93 -0.31 0.82 16 24 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 25 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 26 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 27 H 0.14 3.34 5.35 -52.49 -0.28 3.06 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.38 7.05 8.48 -40.82 -0.35 6.71 16 30 H 0.09 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 254.44 15.07 3.83 3.83 Total: -1.00 -29.99 254.44 -5.97 -35.96 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.27 Total: 6.14 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.05 Total: -9.97 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.46 Total: -38.41 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.08 Total: -14.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.99 -5.97 -35.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218275.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.410 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds