Wall clock time and date at job start Mon Mar 30 2020 03:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 119.99776 * 2 1 4 4 C 1.38215 * 119.99779 * 180.21051 * 3 2 1 5 5 C 1.38252 * 119.99886 * 359.86080 * 4 3 2 6 6 C 1.38212 * 120.00475 * 359.95431 * 5 4 3 7 7 C 1.38210 * 120.00263 * 179.81975 * 2 1 3 8 8 C 1.50702 * 120.00290 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.46580 * 318.13006 * 8 7 2 10 10 C 1.50691 * 109.47483 * 198.12611 * 8 7 2 11 11 H 1.08003 * 120.00118 * 355.49614 * 10 8 7 12 12 C 1.37874 * 120.00277 * 175.49616 * 10 8 7 13 13 N 1.31519 * 119.99842 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00137 * 179.72194 * 12 10 8 15 15 H 1.48495 * 109.47393 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47076 * 120.00231 * 14 12 10 17 17 H 1.48497 * 109.47339 * 240.00061 * 14 12 10 18 18 N 1.46504 * 109.46809 * 78.12266 * 8 7 2 19 19 C 1.34777 * 120.00113 * 65.42559 * 18 8 7 20 20 O 1.21288 * 119.99885 * 355.06809 * 19 18 8 21 21 H 1.09001 * 109.46838 * 270.17816 * 1 2 3 22 22 H 1.08998 * 109.47539 * 30.18117 * 1 2 3 23 23 H 1.09006 * 109.46843 * 150.18604 * 1 2 3 24 24 H 1.08002 * 119.99995 * 0.05141 * 3 2 1 25 25 H 1.08005 * 119.99836 * 179.83834 * 4 3 2 26 26 H 1.08005 * 119.99361 * 179.97438 * 5 4 3 27 27 H 1.07999 * 120.00005 * 179.97438 * 6 5 4 28 28 H 0.96995 * 119.99605 * 179.97438 * 13 12 10 29 29 H 0.96998 * 119.99981 * 245.41864 * 18 8 7 30 30 H 1.07996 * 120.00361 * 175.07068 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0044 5 6 4.2717 0.0001 -0.0059 6 6 3.5807 -1.1969 -0.0020 7 6 2.1981 -1.1969 0.0038 8 6 1.4447 -2.5021 0.0085 9 1 0.6006 -2.4318 0.6945 10 6 2.3631 -3.6107 0.4538 11 1 3.4074 -3.4056 0.6380 12 6 1.8704 -4.8868 0.6262 13 7 0.5988 -5.1366 0.4014 14 14 3.0105 -6.2626 1.1708 15 1 4.3836 -5.7262 1.3493 16 1 2.5281 -6.8250 2.4577 17 1 3.0259 -7.3304 0.1389 18 7 0.9539 -2.7874 -1.3421 19 6 1.8276 -3.0262 -2.3402 20 8 3.0192 -2.9172 -2.1421 21 1 -0.3633 0.0032 1.0277 22 1 -0.3634 0.8883 -0.5166 23 1 -0.3633 -0.8917 -0.5110 24 1 1.6582 2.1327 0.0008 25 1 4.1204 2.1328 -0.0070 26 1 5.3517 0.0002 -0.0097 27 1 4.1207 -2.1322 -0.0036 28 1 0.2523 -6.0344 0.5223 29 1 0.0001 -2.8045 -1.5180 30 1 1.4666 -3.3145 -3.3164 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260218275.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:20 Heat of formation + Delta-G solvation = -29.616721 kcal Electronic energy + Delta-G solvation = -14939.813186 eV Core-core repulsion = 12506.205616 eV Total energy + Delta-G solvation = -2433.607570 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.67245 -39.06591 -35.99000 -34.01817 -33.20455 -32.02212 -28.61142 -27.36519 -25.50985 -22.85468 -22.25685 -20.88671 -18.76608 -18.28629 -17.38313 -16.42370 -15.94867 -15.75146 -15.37543 -14.83131 -14.56007 -14.23240 -14.02570 -13.86485 -13.43182 -12.93038 -12.87634 -12.69997 -12.66360 -12.04723 -11.92138 -11.52380 -11.07898 -10.74008 -10.35432 -9.38248 -9.34350 -9.19308 -8.14930 -6.20323 0.66205 0.76897 1.33730 1.37866 1.48376 2.35472 2.42774 2.88823 3.20932 3.48051 4.17002 4.22750 4.35454 4.44934 4.62496 4.68753 4.82344 4.91808 5.01514 5.14432 5.16998 5.44297 5.50545 5.71624 5.80587 5.89062 6.00469 6.26189 6.30441 6.45707 6.82327 7.24351 7.47935 7.97167 8.91293 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.010965 C = 0.010172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.744975 B = 2552.860613 C = 2752.082984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.102 4.102 3 C -0.136 4.136 4 C -0.128 4.128 5 C -0.155 4.155 6 C -0.093 4.093 7 C -0.088 4.088 8 C 0.304 3.696 9 H 0.041 0.959 10 C -0.518 4.518 11 H 0.048 0.952 12 C 0.030 3.970 13 N -0.902 5.902 14 Si 0.939 3.061 15 H -0.281 1.281 16 H -0.275 1.275 17 H -0.285 1.285 18 N -0.694 5.694 19 C 0.479 3.521 20 O -0.596 6.596 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.145 0.855 25 H 0.145 0.855 26 H 0.124 0.876 27 H 0.100 0.900 28 H 0.261 0.739 29 H 0.392 0.608 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 9.609 -2.282 10.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.102 4.102 3 C -0.154 4.154 4 C -0.146 4.146 5 C -0.173 4.173 6 C -0.111 4.111 7 C -0.089 4.089 8 C 0.202 3.798 9 H 0.059 0.941 10 C -0.557 4.557 11 H 0.066 0.934 12 C -0.171 4.171 13 N -0.541 5.541 14 Si 0.767 3.233 15 H -0.206 1.206 16 H -0.201 1.201 17 H -0.211 1.211 18 N -0.343 5.343 19 C 0.247 3.753 20 O -0.475 6.475 21 H 0.088 0.912 22 H 0.102 0.898 23 H 0.079 0.921 24 H 0.163 0.837 25 H 0.163 0.837 26 H 0.142 0.858 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.225 0.775 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.307 9.520 -2.131 9.843 hybrid contribution 0.274 -1.419 0.202 1.459 sum -1.034 8.101 -1.929 8.392 Atomic orbital electron populations 1.20776 0.90070 1.03032 1.02429 1.20170 0.97261 0.92573 1.00201 1.21228 0.94433 0.97531 1.02177 1.21316 0.94643 0.97878 1.00743 1.21351 1.00162 0.92866 1.02914 1.21269 0.95038 0.97709 0.97134 1.20471 0.94293 0.95640 0.98516 1.17231 0.92774 0.88274 0.81553 0.94120 1.21677 0.95748 0.94395 1.43878 0.93353 1.25480 0.96153 1.00211 0.95232 1.69982 1.13230 1.21290 1.49642 0.85799 0.79639 0.79970 0.77934 1.20594 1.20099 1.21131 1.46716 1.09067 1.68690 1.09823 1.22688 0.86524 0.76693 0.89431 1.90574 1.18848 1.52994 1.85095 0.91189 0.89754 0.92119 0.83698 0.83712 0.85775 0.88194 0.93027 0.77494 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.14 9.28 71.24 0.66 -2.48 16 2 C -0.10 -3.69 5.88 -19.87 -0.12 -3.81 16 3 C -0.14 -4.24 9.70 22.27 0.22 -4.02 16 4 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 5 C -0.15 -5.82 10.05 22.27 0.22 -5.59 16 6 C -0.09 -4.26 7.61 22.27 0.17 -4.09 16 7 C -0.09 -3.91 4.72 -19.87 -0.09 -4.00 16 8 C 0.30 14.62 1.78 43.50 0.08 14.69 16 9 H 0.04 2.06 7.39 -2.39 -0.02 2.04 16 10 C -0.52 -28.64 6.66 25.60 0.17 -28.47 16 11 H 0.05 2.84 5.29 -2.91 -0.02 2.82 16 12 C 0.03 1.64 5.41 84.65 0.46 2.10 16 13 N -0.90 -48.97 12.97 21.45 0.28 -48.70 16 14 Si 0.94 45.02 29.54 68.60 2.03 47.05 16 15 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 18 N -0.69 -29.41 4.23 -463.44 -1.96 -31.37 16 19 C 0.48 20.61 12.05 129.79 1.56 22.17 16 20 O -0.60 -30.94 13.95 -3.05 -0.04 -30.99 16 21 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.08 1.96 8.09 -2.39 -0.02 1.94 16 23 H 0.06 1.88 5.96 -2.38 -0.01 1.86 16 24 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 25 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 26 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 27 H 0.10 5.23 5.35 -2.91 -0.02 5.22 16 28 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 29 H 0.39 14.31 8.48 -92.71 -0.79 13.53 16 30 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -65.91 254.44 4.22 -61.69 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.37 Total: 19.62 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 3.55 Total: -17.30 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -1.68 Total: -80.06 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.04 Total: -30.99 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.91 4.22 -61.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218275.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.071 kcal (2) G-P(sol) polarization free energy of solvation -65.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds