Wall clock time and date at job start Mon Mar 30 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00030 * 2 1 4 4 H 1.48499 * 109.47091 * 270.00110 * 3 2 1 5 5 H 1.48507 * 109.47020 * 29.99863 * 3 2 1 6 6 H 1.48498 * 109.47218 * 150.00034 * 3 2 1 7 7 C 1.37880 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99617 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.83681 * 300.82080 * 9 7 2 11 11 C 1.53439 * 109.79547 * 179.97438 * 9 7 2 12 12 C 1.52856 * 108.84483 * 177.22544 * 11 9 7 13 13 H 1.08999 * 109.29854 * 291.01947 * 12 11 9 14 14 O 1.42904 * 109.29731 * 171.43796 * 12 11 9 15 15 C 1.50599 * 110.49093 * 51.33503 * 12 11 9 16 16 C 1.38500 * 118.93460 * 159.39664 * 15 12 11 17 17 C 1.38121 * 120.30416 * 179.84066 * 16 15 12 18 18 C 1.38309 * 120.16285 * 359.97438 * 17 16 15 19 19 C 1.38021 * 119.90948 * 0.08087 * 18 17 16 20 20 C 1.38605 * 121.49755 * 339.34709 * 15 12 11 21 21 N 1.39925 * 120.84296 * 0.46856 * 20 15 12 22 22 H 0.96998 * 119.99616 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.57443 * 57.41464 * 11 9 7 24 24 H 1.09002 * 109.57120 * 297.03772 * 11 9 7 25 25 H 0.96692 * 113.99642 * 179.97438 * 14 12 11 26 26 H 1.07998 * 119.84911 * 359.86706 * 16 15 12 27 27 H 1.08000 * 119.92296 * 179.97438 * 17 16 15 28 28 H 1.08001 * 120.04614 * 180.10337 * 18 17 16 29 29 H 1.08004 * 119.98095 * 180.02562 * 19 18 17 30 30 H 0.96999 * 120.53566 * 166.46891 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6109 -2.5565 0.8808 11 6 2.2416 -3.6710 0.0005 12 6 1.4567 -4.9808 0.0706 13 1 0.9909 -5.0696 1.0520 14 8 2.3502 -6.0780 -0.1292 15 6 0.3897 -5.0134 -0.9917 16 6 -0.1310 -6.2363 -1.3812 17 6 -1.1129 -6.2989 -2.3505 18 6 -1.5835 -5.1390 -2.9389 19 6 -1.0693 -3.9163 -2.5575 20 6 -0.0794 -3.8508 -1.5829 21 7 0.4338 -2.6019 -1.2160 22 1 -0.4849 0.8401 0.0004 23 1 2.8997 -3.5929 0.8659 24 1 2.8338 -3.6485 -0.9143 25 1 1.9221 -6.9444 -0.0977 26 1 0.2322 -7.1451 -0.9245 27 1 -1.5142 -7.2558 -2.6499 28 1 -2.3525 -5.1900 -3.6955 29 1 -1.4363 -3.0098 -3.0159 30 1 0.2532 -1.8168 -1.7563 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260236824.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:37 Heat of formation + Delta-G solvation = -32.809093 kcal Electronic energy + Delta-G solvation = -14693.500813 eV Core-core repulsion = 12259.754811 eV Total energy + Delta-G solvation = -2433.746002 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44548 -36.33986 -35.48662 -32.51989 -31.12156 -29.70267 -28.40597 -25.72831 -22.91338 -21.84994 -21.53973 -18.79504 -17.39310 -16.76972 -16.00168 -15.34467 -14.88441 -14.53340 -13.89961 -13.40181 -13.10754 -12.78786 -12.40227 -12.23685 -11.98815 -11.55194 -11.09153 -10.79729 -10.69098 -10.62103 -10.38635 -10.19529 -9.46630 -9.39536 -9.00206 -8.73631 -8.16711 -6.31616 -6.27549 -4.42773 1.99241 2.34553 3.16454 3.24693 3.28083 4.20728 4.43981 4.60984 4.91885 5.22771 5.35333 5.41981 5.62882 5.74017 5.86788 6.05881 6.24565 6.40441 6.53041 6.62546 6.67761 6.85296 7.01470 7.13899 7.20752 7.39520 7.61584 7.66575 7.84497 8.08386 8.48004 8.78169 9.11455 9.27983 10.75736 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037697 B = 0.009185 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.584835 B = 3047.697382 C = 3660.745487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.070 3.930 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.068 0.932 9 C 0.274 3.726 10 H 0.033 0.967 11 C -0.116 4.116 12 C 0.156 3.844 13 H 0.052 0.948 14 O -0.565 6.565 15 C -0.210 4.210 16 C -0.068 4.068 17 C -0.211 4.211 18 C -0.072 4.072 19 C -0.215 4.215 20 C 0.248 3.752 21 N -0.703 5.703 22 H 0.267 0.733 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.365 0.635 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.259 -7.961 -2.186 8.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.086 0.914 9 C 0.173 3.827 10 H 0.051 0.949 11 C -0.155 4.155 12 C 0.098 3.902 13 H 0.070 0.930 14 O -0.370 6.370 15 C -0.216 4.216 16 C -0.087 4.087 17 C -0.232 4.232 18 C -0.091 4.091 19 C -0.238 4.238 20 C 0.136 3.864 21 N -0.326 5.326 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.212 0.788 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.829 -7.255 -2.011 7.574 hybrid contribution -0.281 0.737 -0.239 0.824 sum -1.109 -6.517 -2.250 6.984 Atomic orbital electron populations 1.69978 1.05945 1.27423 1.48160 1.25147 0.94994 0.99737 0.93616 0.86459 0.79952 0.82518 0.78365 1.20400 1.20986 1.19526 1.21216 0.93560 0.89621 1.52660 0.91354 1.18783 0.87742 0.92015 0.84210 0.94926 1.21892 0.98913 0.92308 1.02381 1.20533 0.88017 0.87529 0.94153 0.93049 1.86558 1.38191 1.16467 1.95831 1.19856 1.03695 0.92485 1.05581 1.20532 0.95745 0.95766 0.96653 1.20498 1.02776 0.97494 1.02388 1.20723 0.98051 0.92332 0.97973 1.20665 1.01330 0.97879 1.03925 1.17959 0.89948 0.87230 0.91313 1.46244 1.53075 1.04978 1.28296 0.92365 0.91306 0.91697 0.78787 0.87571 0.87551 0.87279 0.86875 0.76062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.57 12.43 55.43 0.69 -22.88 16 2 C 0.07 1.82 5.22 -17.82 -0.09 1.73 16 3 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.53 -13.80 8.69 -34.44 -0.30 -14.10 16 8 H 0.07 1.75 7.75 -52.49 -0.41 1.35 16 9 C 0.27 6.69 2.75 -68.63 -0.19 6.50 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 11 C -0.12 -2.53 5.00 -26.58 -0.13 -2.66 16 12 C 0.16 3.02 3.59 -28.01 -0.10 2.92 16 13 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 14 O -0.57 -9.90 13.14 -35.23 -0.46 -10.36 16 15 C -0.21 -4.16 5.60 -104.44 -0.59 -4.74 16 16 C -0.07 -1.15 9.26 -39.53 -0.37 -1.51 16 17 C -0.21 -3.39 10.04 -39.60 -0.40 -3.78 16 18 C -0.07 -1.20 10.05 -39.63 -0.40 -1.60 16 19 C -0.21 -4.12 9.88 -39.35 -0.39 -4.51 16 20 C 0.25 5.29 6.47 -83.72 -0.54 4.75 16 21 N -0.70 -16.50 5.27 -52.77 -0.28 -16.77 16 22 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 23 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 24 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 25 H 0.37 4.73 7.34 45.56 0.33 5.06 16 26 H 0.11 1.43 6.60 -52.49 -0.35 1.09 16 27 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 29 H 0.11 2.07 8.06 -52.48 -0.42 1.65 16 30 H 0.40 9.81 7.79 -40.82 -0.32 9.49 16 LS Contribution 252.77 15.07 3.81 3.81 Total: -1.00 -27.62 252.77 -7.59 -35.21 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -2.83 Total: 12.97 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -3.49 Total: -17.00 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.41 Total: -39.65 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.46 Total: -10.36 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.62 -7.59 -35.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236824.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.399 kcal (2) G-P(sol) polarization free energy of solvation -27.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds