Wall clock time and date at job start Mon Mar 30 2020 02:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00030 * 2 1 4 4 H 1.48499 * 109.47091 * 270.00110 * 3 2 1 5 5 H 1.48507 * 109.47020 * 29.99863 * 3 2 1 6 6 H 1.48498 * 109.47218 * 150.00034 * 3 2 1 7 7 C 1.37880 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99812 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99617 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.83681 * 300.82080 * 9 7 2 11 11 C 1.53439 * 109.79547 * 179.97438 * 9 7 2 12 12 C 1.52856 * 108.84483 * 177.22544 * 11 9 7 13 13 H 1.08999 * 109.29854 * 291.01947 * 12 11 9 14 14 O 1.42904 * 109.29731 * 171.43796 * 12 11 9 15 15 C 1.50599 * 110.49093 * 51.33503 * 12 11 9 16 16 C 1.38500 * 118.93460 * 159.39664 * 15 12 11 17 17 C 1.38121 * 120.30416 * 179.84066 * 16 15 12 18 18 C 1.38309 * 120.16285 * 359.97438 * 17 16 15 19 19 C 1.38021 * 119.90948 * 0.08087 * 18 17 16 20 20 C 1.38605 * 121.49755 * 339.34709 * 15 12 11 21 21 N 1.39925 * 120.84296 * 0.46856 * 20 15 12 22 22 H 0.96998 * 119.99616 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.57443 * 57.41464 * 11 9 7 24 24 H 1.09002 * 109.57120 * 297.03772 * 11 9 7 25 25 H 0.96692 * 113.99642 * 179.97438 * 14 12 11 26 26 H 1.07998 * 119.84911 * 359.86706 * 16 15 12 27 27 H 1.08000 * 119.92296 * 179.97438 * 17 16 15 28 28 H 1.08001 * 120.04614 * 180.10337 * 18 17 16 29 29 H 1.08004 * 119.98095 * 180.02562 * 19 18 17 30 30 H 0.96999 * 120.53566 * 166.46891 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6109 -2.5565 0.8808 11 6 2.2416 -3.6710 0.0005 12 6 1.4567 -4.9808 0.0706 13 1 0.9909 -5.0696 1.0520 14 8 2.3502 -6.0780 -0.1292 15 6 0.3897 -5.0134 -0.9917 16 6 -0.1310 -6.2363 -1.3812 17 6 -1.1129 -6.2989 -2.3505 18 6 -1.5835 -5.1390 -2.9389 19 6 -1.0693 -3.9163 -2.5575 20 6 -0.0794 -3.8508 -1.5829 21 7 0.4338 -2.6019 -1.2160 22 1 -0.4849 0.8401 0.0004 23 1 2.8997 -3.5929 0.8659 24 1 2.8338 -3.6485 -0.9143 25 1 1.9221 -6.9444 -0.0977 26 1 0.2322 -7.1451 -0.9245 27 1 -1.5142 -7.2558 -2.6499 28 1 -2.3525 -5.1900 -3.6955 29 1 -1.4363 -3.0098 -3.0159 30 1 0.2532 -1.8168 -1.7563 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260236824.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:36 Heat of formation + Delta-G solvation = -51.589725 kcal Electronic energy + Delta-G solvation = -14694.315202 eV Core-core repulsion = 12259.754811 eV Total energy + Delta-G solvation = -2434.560391 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.94671 -37.77943 -37.13479 -34.39663 -32.64211 -31.27934 -29.94637 -27.55508 -24.54061 -23.50337 -22.98728 -20.40222 -18.99439 -18.52904 -17.52362 -16.85933 -16.62824 -16.20562 -15.38869 -14.92460 -14.61990 -14.42864 -14.04712 -13.88716 -13.62226 -12.96966 -12.87521 -12.50836 -12.39249 -12.07376 -12.00477 -11.92255 -11.24122 -10.93237 -10.77867 -10.52021 -9.56783 -8.28121 -7.92386 -6.47457 0.59130 0.92173 1.39281 1.41425 1.51920 2.34463 2.80371 3.02315 3.36797 3.51637 3.90250 4.00315 4.28798 4.29067 4.37736 4.70082 4.73926 4.86026 4.90586 4.92738 5.20963 5.26491 5.46015 5.60114 5.67565 5.72402 5.82193 5.93943 6.24821 6.57029 6.88417 6.97420 7.25894 7.34228 8.78207 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.037697 B = 0.009185 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.584835 B = 3047.697382 C = 3660.745487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.028 3.972 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.279 3.721 10 H -0.003 1.003 11 C -0.110 4.110 12 C 0.164 3.836 13 H 0.057 0.943 14 O -0.569 6.569 15 C -0.229 4.229 16 C -0.068 4.068 17 C -0.198 4.198 18 C -0.070 4.070 19 C -0.230 4.230 20 C 0.210 3.790 21 N -0.720 5.720 22 H 0.267 0.733 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.388 0.612 26 H 0.145 0.855 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.110 0.890 30 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 -9.849 -2.892 10.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.083 0.917 9 C 0.176 3.824 10 H 0.014 0.986 11 C -0.148 4.148 12 C 0.105 3.895 13 H 0.074 0.926 14 O -0.377 6.377 15 C -0.235 4.235 16 C -0.086 4.086 17 C -0.218 4.218 18 C -0.089 4.089 19 C -0.253 4.253 20 C 0.102 3.898 21 N -0.345 5.345 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.068 0.932 25 H 0.238 0.762 26 H 0.163 0.837 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.128 0.872 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.149 -9.211 -2.727 9.674 hybrid contribution -0.261 1.156 -0.075 1.187 sum -1.411 -8.055 -2.802 8.644 Atomic orbital electron populations 1.70091 1.07224 1.28099 1.48871 1.25866 0.95718 1.02768 0.93115 0.85454 0.78716 0.78486 0.78387 1.19964 1.20681 1.19093 1.21489 0.93589 0.90926 1.53045 0.91723 1.18498 0.87604 0.92669 0.83624 0.98550 1.21725 0.98351 0.93238 1.01499 1.20253 0.87706 0.86965 0.94539 0.92553 1.86509 1.38135 1.17318 1.95780 1.20101 1.04248 0.93241 1.05911 1.20985 0.95318 0.95861 0.96425 1.21035 1.01260 0.98869 1.00676 1.21146 0.98124 0.91432 0.98180 1.20848 1.01338 0.99269 1.03856 1.18344 0.91463 0.86879 0.93112 1.45913 1.54721 1.05641 1.28192 0.92356 0.91173 0.93231 0.76183 0.83734 0.83602 0.83969 0.87185 0.77356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.21 12.43 21.45 0.27 -49.94 16 2 C 0.03 1.47 5.22 84.65 0.44 1.91 16 3 Si 0.96 41.89 29.54 68.60 2.03 43.91 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.55 -29.73 8.69 25.60 0.22 -29.51 16 8 H 0.06 3.42 7.75 -2.91 -0.02 3.40 16 9 C 0.28 14.24 2.75 44.31 0.12 14.36 16 10 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 11 C -0.11 -4.88 5.00 30.69 0.15 -4.73 16 12 C 0.16 6.26 3.59 29.77 0.11 6.36 16 13 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 14 O -0.57 -18.68 13.14 -148.98 -1.96 -20.64 16 15 C -0.23 -8.81 5.60 -19.75 -0.11 -8.92 16 16 C -0.07 -2.02 9.26 22.30 0.21 -1.82 16 17 C -0.20 -5.46 10.04 22.26 0.22 -5.24 16 18 C -0.07 -2.13 10.05 22.24 0.22 -1.90 16 19 C -0.23 -8.72 9.88 22.42 0.22 -8.50 16 20 C 0.21 9.11 6.47 38.14 0.25 9.35 16 21 N -0.72 -35.34 5.27 -320.87 -1.69 -37.03 16 22 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 23 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 24 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 25 H 0.39 8.62 7.34 -74.06 -0.54 8.08 16 26 H 0.15 3.14 6.60 -2.91 -0.02 3.12 16 27 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 28 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.39 20.19 7.79 -92.71 -0.72 19.47 16 Total: -1.00 -60.94 252.77 0.60 -60.34 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.11 Total: 31.99 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 2.06 Total: -28.63 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -1.42 Total: -86.97 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -1.96 Total: -20.64 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -60.94 0.60 -60.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236824.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.752 kcal (2) G-P(sol) polarization free energy of solvation -60.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds