Wall clock time and date at job start Mon Mar 30 2020 02:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00167 * 2 1 4 4 H 1.48501 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46671 * 300.00157 * 3 2 1 6 6 H 1.48498 * 109.47087 * 60.00033 * 3 2 1 7 7 C 1.37877 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00297 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.78566 * 59.20057 * 9 7 2 11 11 C 1.53424 * 109.79743 * 179.97438 * 9 7 2 12 12 C 1.52856 * 108.84391 * 56.43567 * 11 9 7 13 13 H 1.09003 * 109.13663 * 291.11498 * 12 11 9 14 14 O 1.42906 * 109.30194 * 171.63810 * 12 11 9 15 15 C 1.50595 * 110.49036 * 51.32593 * 12 11 9 16 16 C 1.38503 * 118.93146 * 159.51664 * 15 12 11 17 17 C 1.38123 * 120.30340 * 180.02562 * 16 15 12 18 18 C 1.38312 * 120.16196 * 359.42430 * 17 16 15 19 19 C 1.38019 * 119.90736 * 0.59322 * 18 17 16 20 20 C 1.38605 * 121.50154 * 339.37247 * 15 12 11 21 21 N 1.39917 * 120.84472 * 0.43957 * 20 15 12 22 22 H 0.96999 * 120.00073 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.57885 * 296.62557 * 11 9 7 24 24 H 1.09002 * 109.57735 * 176.24058 * 11 9 7 25 25 H 0.96700 * 114.00295 * 178.96406 * 14 12 11 26 26 H 1.08002 * 119.84457 * 359.77008 * 16 15 12 27 27 H 1.08001 * 119.91360 * 179.68219 * 17 16 15 28 28 H 1.08000 * 120.04136 * 180.33375 * 18 17 16 29 29 H 1.08000 * 119.98033 * 179.79427 * 19 18 17 30 30 H 0.97003 * 120.54459 * 166.48967 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 1 0.6114 -2.5567 -0.8791 11 6 2.2415 -3.6709 0.0015 12 6 3.1719 -3.5311 1.2061 13 1 3.8244 -2.6710 1.0557 14 8 3.9677 -4.7119 1.3278 15 6 2.3743 -3.3362 2.4685 16 6 2.9706 -3.6136 3.6874 17 6 2.2650 -3.4453 4.8628 18 6 0.9605 -2.9867 4.8307 19 6 0.3586 -2.7082 3.6203 20 6 1.0643 -2.8846 2.4350 21 7 0.4338 -2.6021 1.2183 22 1 -0.4850 0.8400 0.0004 23 1 2.8280 -3.6532 -0.9170 24 1 1.6946 -4.6114 0.0696 25 1 4.5953 -4.6892 2.0631 26 1 3.9906 -3.9671 3.7187 27 1 2.7345 -3.6685 5.8095 28 1 0.4124 -2.8506 5.7513 29 1 -0.6611 -2.3532 3.5937 30 1 -0.5273 -2.4765 1.1786 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260236827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:40 Heat of formation + Delta-G solvation = -28.320236 kcal Electronic energy + Delta-G solvation = -14984.730621 eV Core-core repulsion = 12551.179270 eV Total energy + Delta-G solvation = -2433.551350 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36210 -36.24219 -35.38216 -32.29796 -31.03847 -29.55750 -28.29301 -25.51796 -23.07490 -21.86003 -21.41825 -18.76951 -17.36268 -16.36426 -15.96582 -15.29829 -14.75559 -14.57991 -13.72697 -13.23721 -12.97254 -12.77400 -12.47238 -12.07310 -11.63589 -11.35923 -11.14180 -10.99740 -10.67871 -10.51768 -10.29833 -9.94544 -9.65541 -9.13276 -8.77805 -8.64290 -7.99607 -6.39999 -6.03724 -4.28298 2.13998 2.48436 3.21027 3.30231 3.33758 4.31108 4.53416 4.74454 5.04635 5.31636 5.49635 5.55159 5.74698 5.85639 6.03698 6.18840 6.32577 6.53909 6.59113 6.74592 6.75318 6.86404 7.11100 7.22525 7.27237 7.34502 7.67466 7.75277 8.08766 8.19697 8.51422 8.84024 9.05833 9.43100 10.87602 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.026735 B = 0.011972 C = 0.010446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.056399 B = 2338.245254 C = 2679.821458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.078 3.922 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.269 3.731 10 H 0.054 0.946 11 C -0.114 4.114 12 C 0.164 3.836 13 H 0.065 0.935 14 O -0.573 6.573 15 C -0.190 4.190 16 C -0.074 4.074 17 C -0.210 4.210 18 C -0.077 4.077 19 C -0.215 4.215 20 C 0.267 3.733 21 N -0.708 5.708 22 H 0.262 0.738 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.365 0.635 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 -4.897 4.953 7.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.127 4.127 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.167 3.833 10 H 0.072 0.928 11 C -0.152 4.152 12 C 0.106 3.894 13 H 0.083 0.917 14 O -0.378 6.378 15 C -0.196 4.196 16 C -0.093 4.093 17 C -0.231 4.231 18 C -0.096 4.096 19 C -0.239 4.239 20 C 0.155 3.845 21 N -0.329 5.329 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.212 0.788 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.338 -4.934 4.156 6.862 hybrid contribution 0.316 1.435 0.692 1.624 sum 2.654 -3.499 4.849 6.542 Atomic orbital electron populations 1.69894 1.06075 1.26922 1.48867 1.24977 0.94801 0.99313 0.93624 0.86534 0.80351 0.83497 0.77625 1.19579 1.20879 1.20931 1.21525 0.93193 0.90512 1.51949 0.91996 1.18854 0.88760 0.91440 0.84260 0.92778 1.21782 0.97803 0.99428 0.96218 1.20372 0.90852 0.86011 0.92191 0.91738 1.86509 1.54722 1.41997 1.54585 1.19781 0.95340 1.09042 0.95425 1.20536 0.98236 0.98529 0.91994 1.20467 0.95795 1.09803 0.97012 1.20671 0.94831 0.97587 0.96492 1.20620 1.00891 1.10689 0.91673 1.17612 0.90947 0.89077 0.86820 1.45793 1.08888 1.73104 1.05139 0.92823 0.91486 0.92980 0.78823 0.87716 0.87746 0.87514 0.87168 0.77610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.83 12.86 55.43 0.71 -23.12 16 2 C 0.08 2.06 5.40 -17.82 -0.10 1.96 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.53 -13.84 7.86 -34.44 -0.27 -14.11 16 8 H 0.06 1.62 6.51 -52.48 -0.34 1.27 16 9 C 0.27 6.36 3.15 -68.63 -0.22 6.14 16 10 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 11 C -0.11 -2.42 5.31 -26.59 -0.14 -2.56 16 12 C 0.16 3.35 3.11 -28.01 -0.09 3.26 16 13 H 0.06 1.39 6.71 -51.93 -0.35 1.04 16 14 O -0.57 -10.42 13.13 -35.23 -0.46 -10.88 16 15 C -0.19 -3.97 5.55 -104.44 -0.58 -4.55 16 16 C -0.07 -1.34 9.27 -39.53 -0.37 -1.71 16 17 C -0.21 -3.62 10.04 -39.60 -0.40 -4.02 16 18 C -0.08 -1.36 10.05 -39.63 -0.40 -1.76 16 19 C -0.22 -4.31 9.88 -39.35 -0.39 -4.70 16 20 C 0.27 5.85 6.29 -83.72 -0.53 5.33 16 21 N -0.71 -16.12 4.90 -52.77 -0.26 -16.38 16 22 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 23 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.37 5.08 7.39 45.56 0.34 5.42 16 26 H 0.10 1.55 6.62 -52.49 -0.35 1.21 16 27 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.11 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.39 8.71 8.86 -40.82 -0.36 8.35 16 LS Contribution 250.66 15.07 3.78 3.78 Total: -1.00 -28.17 250.66 -7.45 -35.62 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -2.73 Total: 11.85 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -3.47 Total: -16.71 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.45 Total: -39.50 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.46 Total: -10.88 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.17 -7.45 -35.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260236827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.299 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds