Wall clock time and date at job start Mon Mar 30 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38421 * 119.91646 * 2 1 4 4 C 1.38380 * 120.34719 * 180.02562 * 3 2 1 5 5 C 1.37909 * 120.17437 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.08759 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47545 * 145.00180 * 6 5 4 8 8 N 1.46900 * 109.47209 * 24.99877 * 6 5 4 9 9 C 1.50706 * 109.47259 * 264.99839 * 6 5 4 10 10 H 1.08005 * 119.99758 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00102 * 180.02562 * 9 6 5 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47483 * 269.99808 * 13 11 9 15 15 H 1.48499 * 109.47134 * 30.00322 * 13 11 9 16 16 H 1.48507 * 109.46904 * 150.00145 * 13 11 9 17 17 C 1.39835 * 119.82250 * 0.25579 * 5 4 3 18 18 C 1.47163 * 120.16792 * 179.74583 * 17 5 4 19 19 O 1.21259 * 119.99704 * 179.97438 * 18 17 5 20 20 C 1.37867 * 119.90933 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47330 * 90.00351 * 1 2 3 22 22 H 1.09005 * 109.47890 * 210.00723 * 1 2 3 23 23 H 1.09011 * 109.47021 * 330.00571 * 1 2 3 24 24 H 1.08002 * 119.82628 * 359.96834 * 3 2 1 25 25 H 1.07999 * 119.91107 * 180.02562 * 4 3 2 26 26 H 1.00900 * 111.00100 * 299.99420 * 8 6 5 27 27 H 1.00898 * 111.00378 * 63.95632 * 8 6 5 28 28 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 29 29 H 1.08002 * 120.00177 * 359.97438 * 18 17 5 30 30 H 1.08000 * 120.08453 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1998 0.0000 4 6 3.5811 1.2102 -0.0005 5 6 4.2832 0.0232 -0.0005 6 6 5.7901 0.0368 -0.0017 7 1 6.1616 -0.8014 0.5878 8 7 6.2689 1.2967 0.5827 9 6 6.2925 -0.0832 -1.4175 10 1 5.5907 -0.1610 -2.2347 11 6 7.6480 -0.0935 -1.6694 12 7 8.5026 0.0008 -0.6743 13 14 8.2706 -0.2430 -3.4243 14 1 8.4479 -1.6771 -3.7663 15 1 7.2864 0.3693 -4.3525 16 1 9.5727 0.4602 -3.5491 17 6 3.5931 -1.1930 -0.0054 18 6 4.3347 -2.4641 -0.0111 19 8 3.7331 -3.5169 -0.0149 20 6 2.1944 -1.1951 0.0005 21 1 -0.3634 -0.0001 -1.0276 22 1 -0.3635 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5138 24 1 1.6531 2.1327 -0.0005 25 1 4.1126 2.1503 -0.0001 26 1 5.9379 2.0895 0.0536 27 1 5.9996 1.3710 1.5522 28 1 8.1792 0.0780 0.2370 29 1 5.4147 -2.4592 -0.0119 30 1 1.6543 -2.1303 0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260270154.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:46 Heat of formation + Delta-G solvation = -20.197639 kcal Electronic energy + Delta-G solvation = -14433.603290 eV Core-core repulsion = 12000.404162 eV Total energy + Delta-G solvation = -2433.199128 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.62554 -37.77082 -35.42364 -32.32196 -31.14989 -30.39435 -27.21956 -25.15159 -24.36616 -22.43674 -20.63212 -19.67034 -16.98861 -16.37534 -15.72626 -15.11232 -14.58501 -14.11121 -13.88301 -13.70522 -13.49540 -13.33746 -13.25920 -12.39458 -12.18295 -11.91472 -11.55420 -11.25222 -10.82386 -10.68113 -10.41452 -10.10341 -9.17564 -8.98955 -8.60105 -8.44242 -7.94243 -7.64864 -6.28630 -4.14900 1.09985 1.77739 2.91881 3.44014 3.46616 3.62334 4.20166 4.54105 4.81284 5.03766 5.18129 5.31149 5.36923 5.47786 5.64715 5.68922 5.76720 5.84803 5.93976 6.13667 6.26249 6.42820 6.63001 6.74238 6.80879 7.09680 7.30000 7.80112 7.92299 8.16563 8.52128 8.61795 8.93294 9.69226 11.10886 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.030474 B = 0.009160 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.580441 B = 3055.967111 C = 3365.875634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C -0.085 4.085 4 C -0.144 4.144 5 C -0.017 4.017 6 C 0.229 3.771 7 H 0.045 0.955 8 N -0.829 5.829 9 C -0.612 4.612 10 H 0.048 0.952 11 C 0.042 3.958 12 N -0.886 5.886 13 Si 1.065 2.935 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.284 1.284 17 C -0.191 4.191 18 C 0.392 3.608 19 O -0.485 6.485 20 C -0.061 4.061 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.117 0.883 25 H 0.122 0.878 26 H 0.328 0.672 27 H 0.304 0.696 28 H 0.291 0.709 29 H 0.116 0.884 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.964 2.095 2.073 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.132 4.132 3 C -0.104 4.104 4 C -0.163 4.163 5 C -0.020 4.020 6 C 0.120 3.880 7 H 0.063 0.937 8 N -0.358 5.358 9 C -0.651 4.651 10 H 0.067 0.933 11 C -0.169 4.169 12 N -0.519 5.519 13 Si 0.893 3.107 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.210 1.210 17 C -0.193 4.193 18 C 0.253 3.747 19 O -0.361 6.361 20 C -0.080 4.080 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.135 0.865 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.140 1.204 1.020 9.276 hybrid contribution -2.478 0.595 0.923 2.710 sum -11.618 1.799 1.943 11.916 Atomic orbital electron populations 1.20691 0.91446 1.02210 1.01891 1.19698 0.95808 0.93101 1.04583 1.21158 0.94313 0.97090 0.97798 1.20952 0.93636 0.98334 1.03335 1.21838 1.00291 0.91380 0.88465 1.18525 0.82374 0.89817 0.97264 0.93737 1.59400 1.67298 1.05134 1.03926 1.21656 0.94284 1.59180 0.89963 0.93321 1.25630 0.92989 0.92985 1.05283 1.70543 1.37868 1.41330 1.02157 0.83619 0.75792 0.76757 0.74483 1.21455 1.21646 1.20996 1.20740 0.94049 0.96084 1.08407 1.24314 0.95913 0.86182 0.68243 1.90411 1.74327 1.34613 1.36738 1.21222 0.93375 0.97582 0.95801 0.91681 0.91924 0.91970 0.86502 0.85992 0.85760 0.88473 0.89668 0.86762 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.00 0.36 -0.85 16 2 C -0.13 -2.02 5.87 -104.69 -0.61 -2.63 16 3 C -0.09 -1.31 9.69 -39.46 -0.38 -1.69 16 4 C -0.14 -2.54 9.26 -39.65 -0.37 -2.90 16 5 C -0.02 -0.34 5.02 -104.15 -0.52 -0.86 16 6 C 0.23 5.19 1.83 -70.02 -0.13 5.06 16 7 H 0.05 1.07 6.49 -51.93 -0.34 0.73 16 8 N -0.83 -17.50 7.39 -6.65 -0.05 -17.55 16 9 C -0.61 -15.94 8.71 -34.44 -0.30 -16.24 16 10 H 0.05 1.31 7.74 -52.48 -0.41 0.91 16 11 C 0.04 1.13 5.39 -17.82 -0.10 1.03 16 12 N -0.89 -25.36 13.51 55.43 0.75 -24.62 16 13 Si 1.06 24.45 29.90 -169.99 -5.08 19.37 16 14 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.19 -3.73 5.87 -105.07 -0.62 -4.35 16 18 C 0.39 7.83 10.89 34.35 0.37 8.20 16 19 O -0.49 -10.27 17.17 5.58 0.10 -10.18 16 20 C -0.06 -1.07 9.25 -39.11 -0.36 -1.43 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 23 H 0.06 0.61 8.09 -51.92 -0.42 0.19 16 24 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 25 H 0.12 2.00 6.29 -52.49 -0.33 1.67 16 26 H 0.33 6.67 7.21 -39.29 -0.28 6.38 16 27 H 0.30 5.61 9.06 -39.29 -0.36 5.26 16 28 H 0.29 8.26 6.40 -40.82 -0.26 8.00 16 29 H 0.12 2.30 6.48 -52.49 -0.34 1.96 16 30 H 0.12 2.04 7.65 -52.49 -0.40 1.63 16 LS Contribution 260.75 15.07 3.93 3.93 Total: -1.00 -29.45 260.75 -6.21 -35.66 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.20 Total: 10.03 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.66 Total: -16.65 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.70 Total: -42.16 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.10 Total: -10.18 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.45 -6.21 -35.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270154.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.466 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds