Wall clock time and date at job start Mon Mar 30 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38421 * 119.91646 * 2 1 4 4 C 1.38380 * 120.34719 * 180.02562 * 3 2 1 5 5 C 1.37909 * 120.17437 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.08759 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47545 * 145.00180 * 6 5 4 8 8 N 1.46900 * 109.47209 * 24.99877 * 6 5 4 9 9 C 1.50706 * 109.47259 * 264.99839 * 6 5 4 10 10 H 1.08005 * 119.99758 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00102 * 180.02562 * 9 6 5 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47483 * 269.99808 * 13 11 9 15 15 H 1.48499 * 109.47134 * 30.00322 * 13 11 9 16 16 H 1.48507 * 109.46904 * 150.00145 * 13 11 9 17 17 C 1.39835 * 119.82250 * 0.25579 * 5 4 3 18 18 C 1.47163 * 120.16792 * 179.74583 * 17 5 4 19 19 O 1.21259 * 119.99704 * 179.97438 * 18 17 5 20 20 C 1.37867 * 119.90933 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47330 * 90.00351 * 1 2 3 22 22 H 1.09005 * 109.47890 * 210.00723 * 1 2 3 23 23 H 1.09011 * 109.47021 * 330.00571 * 1 2 3 24 24 H 1.08002 * 119.82628 * 359.96834 * 3 2 1 25 25 H 1.07999 * 119.91107 * 180.02562 * 4 3 2 26 26 H 1.00900 * 111.00100 * 299.99420 * 8 6 5 27 27 H 1.00898 * 111.00378 * 63.95632 * 8 6 5 28 28 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 29 29 H 1.08002 * 120.00177 * 359.97438 * 18 17 5 30 30 H 1.08000 * 120.08453 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1998 0.0000 4 6 3.5811 1.2102 -0.0005 5 6 4.2832 0.0232 -0.0005 6 6 5.7901 0.0368 -0.0017 7 1 6.1616 -0.8014 0.5878 8 7 6.2689 1.2967 0.5827 9 6 6.2925 -0.0832 -1.4175 10 1 5.5907 -0.1610 -2.2347 11 6 7.6480 -0.0935 -1.6694 12 7 8.5026 0.0008 -0.6743 13 14 8.2706 -0.2430 -3.4243 14 1 8.4479 -1.6771 -3.7663 15 1 7.2864 0.3693 -4.3525 16 1 9.5727 0.4602 -3.5491 17 6 3.5931 -1.1930 -0.0054 18 6 4.3347 -2.4641 -0.0111 19 8 3.7331 -3.5169 -0.0149 20 6 2.1944 -1.1951 0.0005 21 1 -0.3634 -0.0001 -1.0276 22 1 -0.3635 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5138 24 1 1.6531 2.1327 -0.0005 25 1 4.1126 2.1503 -0.0001 26 1 5.9379 2.0895 0.0536 27 1 5.9996 1.3710 1.5522 28 1 8.1792 0.0780 0.2370 29 1 5.4147 -2.4592 -0.0119 30 1 1.6543 -2.1303 0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260270154.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:46 Heat of formation + Delta-G solvation = -39.068839 kcal Electronic energy + Delta-G solvation = -14434.421606 eV Core-core repulsion = 12000.404162 eV Total energy + Delta-G solvation = -2434.017445 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08673 -39.32226 -37.06756 -34.02257 -32.68601 -31.83522 -28.66397 -26.86712 -25.83042 -24.08169 -22.16195 -21.13709 -18.91986 -17.88628 -17.22518 -16.60363 -16.29071 -15.57537 -15.52630 -15.34723 -14.92758 -14.82496 -14.45456 -13.98132 -13.81101 -13.07106 -12.87837 -12.67461 -12.58532 -12.29962 -11.99130 -11.88079 -10.86603 -10.75113 -10.48196 -9.96990 -9.49457 -9.27139 -8.37636 -6.26055 -0.34757 0.41784 1.42847 1.57690 1.63951 1.81306 2.60901 2.83256 3.29956 3.34913 3.85269 3.89791 4.05305 4.17025 4.24434 4.38275 4.44812 4.75576 4.82681 4.88829 4.92418 5.03332 5.23492 5.33311 5.53324 5.55854 5.88208 5.99400 6.20568 6.33572 6.66609 6.78420 7.03515 7.64022 8.98827 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.030474 B = 0.009160 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.580441 B = 3055.967111 C = 3365.875634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.122 4.122 3 C -0.075 4.075 4 C -0.150 4.150 5 C -0.040 4.040 6 C 0.234 3.766 7 H 0.023 0.977 8 N -0.836 5.836 9 C -0.613 4.613 10 H 0.034 0.966 11 C -0.003 4.003 12 N -0.915 5.915 13 Si 1.105 2.895 14 H -0.279 1.279 15 H -0.279 1.279 16 H -0.285 1.285 17 C -0.210 4.210 18 C 0.396 3.604 19 O -0.502 6.502 20 C -0.071 4.071 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.157 0.843 25 H 0.131 0.869 26 H 0.334 0.666 27 H 0.321 0.679 28 H 0.281 0.719 29 H 0.105 0.895 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.231 3.305 1.693 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.168 4.168 5 C -0.042 4.042 6 C 0.125 3.875 7 H 0.040 0.960 8 N -0.365 5.365 9 C -0.652 4.652 10 H 0.053 0.947 11 C -0.208 4.208 12 N -0.550 5.550 13 Si 0.929 3.071 14 H -0.205 1.205 15 H -0.204 1.204 16 H -0.211 1.211 17 C -0.212 4.212 18 C 0.258 3.742 19 O -0.379 6.379 20 C -0.089 4.089 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.104 0.896 24 H 0.175 0.825 25 H 0.149 0.851 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.423 2.419 0.649 11.694 hybrid contribution -1.906 0.251 1.087 2.208 sum -13.329 2.670 1.736 13.704 Atomic orbital electron populations 1.20787 0.88182 1.03926 1.03210 1.20192 0.98094 0.92094 1.01790 1.21586 0.93367 0.98830 0.95537 1.21133 0.94960 0.97617 1.03063 1.21555 0.98700 0.92731 0.91259 1.18180 0.84520 0.89627 0.95210 0.95971 1.59159 1.67730 1.04659 1.04997 1.21872 0.93970 1.57911 0.91411 0.94737 1.26771 0.93798 0.92494 1.07730 1.70646 1.38218 1.44013 1.02132 0.83081 0.75485 0.77220 0.71310 1.20523 1.20399 1.21083 1.20710 0.95207 0.95248 1.10040 1.24265 0.95661 0.86619 0.67618 1.90389 1.74445 1.35157 1.37941 1.21414 0.92434 0.99051 0.95987 0.90381 0.91050 0.89566 0.82545 0.85108 0.85192 0.86695 0.90687 0.87852 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 10.01 71.24 0.71 -1.19 16 2 C -0.12 -3.29 5.87 -19.91 -0.12 -3.41 16 3 C -0.08 -2.02 9.69 22.35 0.22 -1.80 16 4 C -0.15 -4.95 9.26 22.23 0.21 -4.75 16 5 C -0.04 -1.58 5.02 -19.56 -0.10 -1.68 16 6 C 0.23 10.81 1.83 43.42 0.08 10.88 16 7 H 0.02 1.12 6.49 -2.39 -0.02 1.11 16 8 N -0.84 -35.41 7.39 -174.95 -1.29 -36.70 16 9 C -0.61 -32.41 8.71 25.60 0.22 -32.18 16 10 H 0.03 1.88 7.74 -2.91 -0.02 1.86 16 11 C 0.00 -0.17 5.39 84.65 0.46 0.29 16 12 N -0.92 -53.39 13.51 21.45 0.29 -53.10 16 13 Si 1.10 49.50 29.90 68.60 2.05 51.55 16 14 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 17 C -0.21 -8.20 5.87 -20.15 -0.12 -8.31 16 18 C 0.40 16.28 10.89 70.17 0.76 17.05 16 19 O -0.50 -21.65 17.17 -2.97 -0.05 -21.70 16 20 C -0.07 -2.34 9.25 22.58 0.21 -2.13 16 21 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.07 1.21 8.08 -2.38 -0.02 1.19 16 23 H 0.09 1.21 8.09 -2.38 -0.02 1.19 16 24 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 25 H 0.13 4.03 6.29 -2.91 -0.02 4.01 16 26 H 0.33 13.39 7.21 -89.69 -0.65 12.75 16 27 H 0.32 11.78 9.06 -89.70 -0.81 10.97 16 28 H 0.28 16.44 6.40 -92.71 -0.59 15.84 16 29 H 0.11 4.43 6.48 -2.91 -0.02 4.41 16 30 H 0.13 4.07 7.65 -2.91 -0.02 4.05 16 Total: -1.00 -63.45 260.75 3.42 -60.03 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -0.11 Total: 27.15 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 2.53 Total: -27.23 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -1.00 Total: -89.80 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.05 Total: -21.70 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.05 Total: 51.55 kcal Total: -63.45 3.42 -60.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260270154.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.966 kcal (2) G-P(sol) polarization free energy of solvation -63.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds