Wall clock time and date at job start Mon Mar 30 2020 02:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47104 * 180.27615 * 3 2 1 5 5 H 1.48496 * 109.47115 * 300.27311 * 3 2 1 6 6 H 1.48494 * 109.47039 * 60.27458 * 3 2 1 7 7 C 1.38655 * 119.99938 * 180.27253 * 2 1 3 8 8 H 1.08000 * 120.00204 * 179.72784 * 7 2 1 9 9 O 1.34832 * 119.99854 * 359.72321 * 7 2 1 10 10 C 1.35756 * 116.99610 * 174.93547 * 9 7 2 11 11 C 1.38720 * 119.89915 * 5.61877 * 10 9 7 12 12 C 1.38089 * 119.75182 * 179.77601 * 11 10 9 13 13 C 1.38115 * 119.94057 * 0.59063 * 12 11 10 14 14 C 1.38774 * 120.52443 * 359.73339 * 13 12 11 15 15 C 1.37736 * 119.77293 * 359.84699 * 14 13 12 16 16 C 1.50699 * 121.69371 * 180.53875 * 15 14 13 17 17 C 1.52899 * 109.97059 * 343.04562 * 16 15 14 18 18 N 1.47163 * 108.50636 * 50.33711 * 17 16 15 19 19 C 1.46624 * 110.24718 * 288.78366 * 18 17 16 20 20 H 0.97001 * 119.99995 * 359.72324 * 1 2 3 21 21 H 1.08003 * 120.12494 * 0.02562 * 11 10 9 22 22 H 1.08001 * 120.02793 * 180.33499 * 12 11 10 23 23 H 1.07998 * 119.73796 * 179.71621 * 13 12 11 24 24 H 1.08998 * 109.39347 * 103.20299 * 16 15 14 25 25 H 1.09002 * 109.38302 * 222.89699 * 16 15 14 26 26 H 1.08997 * 109.63302 * 290.63079 * 17 16 15 27 27 H 1.09004 * 109.62735 * 170.04144 * 17 16 15 28 28 H 1.00904 * 110.99692 * 165.36559 * 18 17 16 29 29 H 1.09002 * 109.30190 * 292.29109 * 19 18 17 30 30 H 1.08996 * 109.30042 * 172.91364 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 -0.0067 5 1 1.8858 2.3993 -1.2091 6 1 1.8959 2.3935 1.2158 7 6 2.0089 -1.2008 -0.0057 8 1 3.0889 -1.2008 -0.0102 9 8 1.3347 -2.3684 -0.0056 10 6 2.0696 -3.5043 -0.1181 11 6 3.4550 -3.4354 -0.1088 12 6 4.1995 -4.5931 -0.2188 13 6 3.5633 -5.8120 -0.3497 14 6 2.1776 -5.8856 -0.3664 15 6 1.4301 -4.7347 -0.2483 16 6 -0.0766 -4.7657 -0.2491 17 6 -0.5712 -6.1013 -0.8052 18 7 0.1286 -7.1881 -0.1016 19 6 1.5339 -7.2392 -0.5168 20 1 -0.4850 0.8400 0.0041 21 1 3.9495 -2.4801 -0.0119 22 1 5.2784 -4.5451 -0.2066 23 1 4.1488 -6.7150 -0.4401 24 1 -0.4416 -4.6407 0.7703 25 1 -0.4548 -3.9532 -0.8695 26 1 -0.3546 -6.1567 -1.8720 27 1 -1.6451 -6.1909 -0.6415 28 1 -0.3277 -8.0740 -0.2599 29 1 1.5903 -7.5511 -1.5597 30 1 2.0662 -7.9619 0.1015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260294440.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:38 Heat of formation + Delta-G solvation = -5.046587 kcal Electronic energy + Delta-G solvation = -14530.005304 eV Core-core repulsion = 12097.463175 eV Total energy + Delta-G solvation = -2432.542129 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51824 -37.37439 -35.38395 -32.41342 -31.30440 -30.12809 -27.80398 -25.40513 -23.86209 -22.66501 -21.01501 -19.30723 -17.48675 -16.95297 -15.83074 -14.89071 -14.81261 -14.25278 -14.13377 -13.95263 -13.56482 -12.93418 -12.52646 -12.39493 -11.79743 -11.68087 -11.43463 -11.24551 -11.05697 -10.56142 -10.48687 -10.28958 -10.21562 -9.24501 -8.81812 -8.32460 -7.78828 -7.11192 -6.42797 -4.00912 2.18798 2.40112 3.13518 3.15054 3.20425 3.98245 4.44747 4.57975 5.07542 5.14674 5.36324 5.40240 5.65777 5.70564 5.78108 5.85613 5.89273 5.96341 6.30540 6.36788 6.49279 6.68877 6.70366 7.01686 7.10886 7.18926 7.34436 7.42186 7.48459 7.61432 7.89524 8.02728 9.03444 9.74151 10.75297 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.040331 B = 0.008532 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.093374 B = 3281.029002 C = 3931.862461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.175 6.175 10 C 0.152 3.848 11 C -0.237 4.237 12 C -0.077 4.077 13 C -0.210 4.210 14 C -0.047 4.047 15 C -0.136 4.136 16 C -0.058 4.058 17 C 0.057 3.943 18 N -0.685 5.685 19 C 0.104 3.896 20 H 0.269 0.731 21 H 0.127 0.873 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.337 0.663 29 H 0.036 0.964 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 -9.458 -1.825 9.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.098 3.902 11 C -0.257 4.257 12 C -0.095 4.095 13 C -0.229 4.229 14 C -0.047 4.047 15 C -0.138 4.138 16 C -0.096 4.096 17 C -0.072 4.072 18 N -0.315 5.315 19 C -0.025 4.025 20 H 0.078 0.922 21 H 0.144 0.856 22 H 0.125 0.875 23 H 0.122 0.878 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.054 0.946 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.095 -8.857 -1.235 9.185 hybrid contribution 0.614 0.512 -0.865 1.178 sum 2.710 -8.345 -2.100 9.022 Atomic orbital electron populations 1.70046 1.05879 1.27447 1.46391 1.25262 0.95836 0.98728 0.96662 0.85663 0.79150 0.80501 0.78213 1.19162 1.20194 1.20170 1.21379 0.91830 0.80891 1.52618 0.89121 1.83962 1.34178 1.11256 1.78407 1.19271 0.90142 0.87719 0.93047 1.21107 0.93739 0.98983 1.11845 1.20628 0.98333 0.92351 0.98186 1.20421 0.93254 0.97125 1.12132 1.19042 0.93076 0.92859 0.99758 1.18604 0.95174 0.90157 1.09832 1.20177 0.91769 0.95650 1.01971 1.22023 0.97684 0.92172 0.95301 1.60606 1.02455 1.07654 1.60759 1.20684 0.88903 0.94964 0.97922 0.92152 0.85582 0.87509 0.87784 0.90959 0.90342 0.95023 0.90853 0.84616 0.94607 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.39 -11.02 9.48 30.89 0.29 -10.73 16 8 H 0.09 2.39 5.19 -52.49 -0.27 2.12 16 9 O -0.17 -4.99 8.90 0.02 0.00 -4.99 16 10 C 0.15 3.79 6.62 -39.02 -0.26 3.53 16 11 C -0.24 -5.38 9.16 -39.46 -0.36 -5.74 16 12 C -0.08 -1.48 10.04 -39.68 -0.40 -1.88 16 13 C -0.21 -3.85 9.64 -39.43 -0.38 -4.23 16 14 C -0.05 -0.90 5.79 -104.64 -0.61 -1.51 16 15 C -0.14 -3.02 5.79 -104.42 -0.60 -3.62 16 16 C -0.06 -1.19 5.54 -27.94 -0.15 -1.34 16 17 C 0.06 0.91 6.59 -3.73 -0.02 0.88 16 18 N -0.68 -10.15 6.88 -115.16 -0.79 -10.94 16 19 C 0.10 1.59 6.34 -5.16 -0.03 1.55 16 20 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 21 H 0.13 2.84 5.63 -52.48 -0.30 2.55 16 22 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 23 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 24 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 25 H 0.08 1.72 7.85 -51.93 -0.41 1.31 16 26 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.34 3.85 8.90 -39.29 -0.35 3.50 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 LS Contribution 253.40 15.07 3.82 3.82 Total: -1.00 -30.80 253.40 -7.28 -38.08 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.41 Total: 4.94 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -2.62 Total: -22.10 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.03 Total: -35.41 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: 0.00 Total: -4.99 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.80 -7.28 -38.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260294440.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.034 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds