Wall clock time and date at job start Mon Mar 30 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47104 * 180.27615 * 3 2 1 5 5 H 1.48496 * 109.47115 * 300.27311 * 3 2 1 6 6 H 1.48494 * 109.47039 * 60.27458 * 3 2 1 7 7 C 1.38655 * 119.99938 * 180.27253 * 2 1 3 8 8 H 1.08000 * 120.00204 * 179.72784 * 7 2 1 9 9 O 1.34832 * 119.99854 * 359.72321 * 7 2 1 10 10 C 1.35756 * 116.99610 * 174.93547 * 9 7 2 11 11 C 1.38720 * 119.89915 * 5.61877 * 10 9 7 12 12 C 1.38089 * 119.75182 * 179.77601 * 11 10 9 13 13 C 1.38115 * 119.94057 * 0.59063 * 12 11 10 14 14 C 1.38774 * 120.52443 * 359.73339 * 13 12 11 15 15 C 1.37736 * 119.77293 * 359.84699 * 14 13 12 16 16 C 1.50699 * 121.69371 * 180.53875 * 15 14 13 17 17 C 1.52899 * 109.97059 * 343.04562 * 16 15 14 18 18 N 1.47163 * 108.50636 * 50.33711 * 17 16 15 19 19 C 1.46624 * 110.24718 * 288.78366 * 18 17 16 20 20 H 0.97001 * 119.99995 * 359.72324 * 1 2 3 21 21 H 1.08003 * 120.12494 * 0.02562 * 11 10 9 22 22 H 1.08001 * 120.02793 * 180.33499 * 12 11 10 23 23 H 1.07998 * 119.73796 * 179.71621 * 13 12 11 24 24 H 1.08998 * 109.39347 * 103.20299 * 16 15 14 25 25 H 1.09002 * 109.38302 * 222.89699 * 16 15 14 26 26 H 1.08997 * 109.63302 * 290.63079 * 17 16 15 27 27 H 1.09004 * 109.62735 * 170.04144 * 17 16 15 28 28 H 1.00904 * 110.99692 * 165.36559 * 18 17 16 29 29 H 1.09002 * 109.30190 * 292.29109 * 19 18 17 30 30 H 1.08996 * 109.30042 * 172.91364 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 -0.0067 5 1 1.8858 2.3993 -1.2091 6 1 1.8959 2.3935 1.2158 7 6 2.0089 -1.2008 -0.0057 8 1 3.0889 -1.2008 -0.0102 9 8 1.3347 -2.3684 -0.0056 10 6 2.0696 -3.5043 -0.1181 11 6 3.4550 -3.4354 -0.1088 12 6 4.1995 -4.5931 -0.2188 13 6 3.5633 -5.8120 -0.3497 14 6 2.1776 -5.8856 -0.3664 15 6 1.4301 -4.7347 -0.2483 16 6 -0.0766 -4.7657 -0.2491 17 6 -0.5712 -6.1013 -0.8052 18 7 0.1286 -7.1881 -0.1016 19 6 1.5339 -7.2392 -0.5168 20 1 -0.4850 0.8400 0.0041 21 1 3.9495 -2.4801 -0.0119 22 1 5.2784 -4.5451 -0.2066 23 1 4.1488 -6.7150 -0.4401 24 1 -0.4416 -4.6407 0.7703 25 1 -0.4548 -3.9532 -0.8695 26 1 -0.3546 -6.1567 -1.8720 27 1 -1.6451 -6.1909 -0.6415 28 1 -0.3277 -8.0740 -0.2599 29 1 1.5903 -7.5511 -1.5597 30 1 2.0662 -7.9619 0.1015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260294440.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:37 Heat of formation + Delta-G solvation = -26.905668 kcal Electronic energy + Delta-G solvation = -14530.953185 eV Core-core repulsion = 12097.463175 eV Total energy + Delta-G solvation = -2433.490010 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.17454 -39.05676 -36.90798 -34.38006 -32.89248 -31.64890 -29.41049 -27.40066 -25.32299 -24.14550 -22.70535 -20.92149 -19.27843 -18.72700 -17.32526 -16.52572 -16.31328 -15.94857 -15.79757 -15.48025 -15.13223 -14.53751 -14.21410 -13.96606 -13.53283 -13.35113 -12.98981 -12.79380 -12.68405 -12.15723 -12.14278 -11.89511 -11.79445 -11.03917 -10.80702 -9.60457 -9.29870 -8.88122 -8.47124 -6.14512 0.54904 0.73698 1.33474 1.41947 1.51637 2.16731 2.80568 3.13842 3.31153 3.48918 3.89557 3.96478 4.21966 4.30326 4.38091 4.52621 4.55576 4.64008 4.66082 4.93390 4.95209 5.03606 5.09895 5.15511 5.41190 5.68018 5.72519 5.79226 5.98490 6.03227 6.24263 6.63040 6.97784 7.79540 8.76001 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.040331 B = 0.008532 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.093374 B = 3281.029002 C = 3931.862461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.415 4.415 8 H 0.098 0.902 9 O -0.224 6.224 10 C 0.108 3.892 11 C -0.254 4.254 12 C -0.076 4.076 13 C -0.190 4.190 14 C -0.050 4.050 15 C -0.159 4.159 16 C -0.058 4.058 17 C 0.069 3.931 18 N -0.691 5.691 19 C 0.104 3.896 20 H 0.272 0.728 21 H 0.116 0.884 22 H 0.145 0.855 23 H 0.152 0.848 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.362 0.638 29 H 0.060 0.940 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 -12.015 -2.241 12.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.491 4.491 8 H 0.115 0.885 9 O -0.130 6.130 10 C 0.058 3.942 11 C -0.274 4.274 12 C -0.094 4.094 13 C -0.208 4.208 14 C -0.050 4.050 15 C -0.161 4.161 16 C -0.095 4.095 17 C -0.060 4.060 18 N -0.324 5.324 19 C -0.024 4.024 20 H 0.081 0.919 21 H 0.134 0.866 22 H 0.163 0.837 23 H 0.170 0.830 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.182 0.818 29 H 0.078 0.922 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.047 -11.487 -1.655 12.291 hybrid contribution 0.118 1.005 -0.741 1.254 sum 4.166 -10.483 -2.396 11.532 Atomic orbital electron populations 1.70191 1.07894 1.28624 1.48882 1.26551 0.96873 1.02571 0.95936 0.84541 0.78157 0.74962 0.78609 1.17704 1.19263 1.19271 1.21853 0.92444 0.81660 1.53146 0.88475 1.83935 1.35596 1.12257 1.81234 1.19921 0.91500 0.87889 0.94925 1.21260 0.93188 1.00233 1.12674 1.21076 1.00183 0.91457 0.96693 1.21033 0.93204 0.98382 1.08223 1.19676 0.93893 0.93862 0.97583 1.19054 0.96250 0.90438 1.10310 1.20112 0.91325 0.97701 1.00383 1.21867 0.98932 0.89977 0.95270 1.60484 1.02606 1.08554 1.60774 1.20820 0.88954 0.92626 1.00038 0.91892 0.86614 0.83696 0.82994 0.93035 0.93688 0.94362 0.88615 0.81771 0.92182 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.98 13.67 21.61 0.30 -56.68 16 2 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 3 Si 1.02 43.80 29.55 68.60 2.03 45.83 16 4 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.41 -24.83 9.48 67.92 0.64 -24.19 16 8 H 0.10 5.41 5.19 -2.91 -0.02 5.39 16 9 O -0.22 -13.80 8.90 -22.83 -0.20 -14.00 16 10 C 0.11 5.65 6.62 22.63 0.15 5.80 16 11 C -0.25 -11.71 9.16 22.35 0.20 -11.50 16 12 C -0.08 -2.74 10.04 22.21 0.22 -2.51 16 13 C -0.19 -6.12 9.64 22.37 0.22 -5.91 16 14 C -0.05 -1.77 5.79 -19.87 -0.12 -1.89 16 15 C -0.16 -7.17 5.79 -19.73 -0.11 -7.28 16 16 C -0.06 -2.44 5.54 29.81 0.17 -2.28 16 17 C 0.07 2.08 6.59 86.22 0.57 2.65 16 18 N -0.69 -18.08 6.88 -518.26 -3.56 -21.65 16 19 C 0.10 2.68 6.34 85.59 0.54 3.22 16 20 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 21 H 0.12 5.42 5.63 -2.91 -0.02 5.40 16 22 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 23 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 24 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.04 2.15 7.85 -2.39 -0.02 2.13 16 26 H 0.04 1.11 8.05 -2.39 -0.02 1.09 16 27 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.36 6.65 8.90 -89.69 -0.80 5.85 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.11 2.26 8.13 -2.39 -0.02 2.24 16 Total: -1.00 -72.75 253.40 1.86 -70.89 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.36 Total: 20.30 kcal Atomic # 6 Polarization: -47.64 SS G_CDS: 2.95 Total: -44.69 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -3.27 Total: -78.33 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.20 Total: -14.00 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -72.75 1.86 -70.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260294440.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.980 kcal (2) G-P(sol) polarization free energy of solvation -72.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds